Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq19381 118 5e-22 seq59517 100 1e-16 >seq19381 Length=19756 Score = 118 bits (130), Expect = 5e-22 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 25928 TTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCT 25987 ||||| || ||| || || ||||||||||| ||||||||||| || || | ||| Sbjct 9155 TTCTC-ATGAATTCGTCGGGGATCCACATTGCGTAAAATAAATCCCTAGCGCGAGACTCT 9097 Query 25988 TCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCT 26047 ||||| || ||| ||| || ||||| || ||||||||||| | ||||| ||||| Sbjct 9096 TCTTTACCAGAATTTTTTCGCAGCTCTAAAAATTCAAAAATATCCGCATGCCAAGGTTCC 9037 Query 26048 AAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTT 26107 || || ||||||||| ||| |||||| || ||||| || |||||||| || || Sbjct 9036 AAGTAAATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGGTCCACGTATCTGGCTGTG 8977 Query 26108 TCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 | |||| | || | ||| |||| || ||| |||| | |||||||| Sbjct 8976 TTATTGTATACGCGAAGCATCGGAATTAGACCATTTGATACGCCGTTTGT 8927 Score = 86.0 bits (94), Expect = 3e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 25030 AACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGAT 25089 |||||||| || | | |||||||| | ||||| |||| ||||||||||||||| || Sbjct 10293 AACTCTTCGTAAATACATATTTGAAGTATAAGGTTCGAAACTTTCATTATTTCCTAAAAT 10234 Query 25090 TTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTT 25149 || | |||||| ||||||||||| |||| || || ||||||| | ||| ||||| Sbjct 10233 CTGTGCAGTAGAAGCTGTTGGCATCGGAGCTAATAGGAGTGAATTTCGGACACCGTATTT 10174 >seq59517 Length=19559 Score = 100 bits (110), Expect = 1e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 ||||||||||||||| |||| ||| | | | ||||||||| | ||||| ||| |||| Sbjct 14724 AAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGATTC 14665 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 |||||||||||| ||||||| ||| || || || ||||| || | | ||| ||||| Sbjct 14664 ATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAATT 14605 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||| | || |||| ||| | || |||||| Sbjct 14604 TCTAACGCCGTATTGTTTAATTTTTTCTTTTAA 14572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252792095604950