Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq69273 266 1e-66 seq9614 165 2e-36 >seq69273 Length=3889 Score = 266 bits (294), Expect = 1e-66 Identities = 233/290 (80%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 2240 GTTTACCTCACAGAGGTAGGAACAGACACCGCAAAAGAGCAGATTTATAACCGTTTCACG 2299 |||||||| || || | || || || ||||| |||||||||||||||||||| ||||| Sbjct 779 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 720 Query 2300 CTGGTGGCGCAAAGAGACGAGCCGCTGGCGGGAGCGGTTCATTTCCCGAATAACCCAGAA 2359 ||| | || || | || || ||||| | || || ||||| |||||||||||||| || Sbjct 719 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 660 Query 2360 ATCTACGATCTAACAGAGGCCCAACAACTAACAGCTGAAGAGCAGGTGGAAAAATGGGTA 2419 || | ||||| || || || || || || || |||||||||||||| ||||||||||| Sbjct 659 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 600 Query 2420 GACGGAAAGAAAAAGATCGTCTGGGACAGCAAAAAACGACGAAATGAGGCGCTCGATTGC 2479 || || | |||||| || | |||||||||||||| ||||| |||||||| ||||| ||| Sbjct 599 GATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 540 Query 2480 TTTGTTTATGCACTGGCGGCGCTGCGTATAAGCATATCCCGCTGGCAGCT 2529 || |||||||| |||||||||||||| || || || |||||||||||||| Sbjct 539 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCT 490 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 13280 ggCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCACCGCGGGGAA 13339 || || ||||| || ||||||||| || |||||||| || || |||||||| || || Sbjct 3806 GGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAG 3747 Query 13340 TTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTATCGCCTGATG 13399 || |||||||| || || |||||||||| || ||||||| ||||| || || |||||| Sbjct 3746 TTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTTTACCGGCTGATG 3687 Query 13400 CGCGGGTATGCCTCGGGTGGTCTGGTCGG 13428 ||||| |||||| | || ||| ||||| Sbjct 3686 CGCGGCTATGCCACCGGCGGTTATGTCGG 3658 >seq9614 Length=652 Score = 165 bits (182), Expect = 2e-36 Identities = 198/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 39555 CGCAATATTTTCGTCGTCGGCGATCTGCATGGGTGCTACACGCTGCTGATGAATGAACTC 39614 || ||||||| || || ||||||||||| || ||||||||| |||||||| |||| Sbjct 275 CGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGAACCTGATGAACAAACTG 216 Query 39615 GAAAAGGTTTCGTTCGACCCTGCGTGTGATTTGCTGATTTCGGTTGGAGACCTTGTTGAC 39674 || | | || |||||| || |||| || ||||| || || | ||||| Sbjct 215 GATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGGTGGGCGATTTGGTTGAT 156 Query 39675 CGCGGCGCGGAAAACGTCGAGTGCCTGGAGCTGATTACTATGCCTTGGTTCCGGGCTGTG 39734 || || || || ||||| || |||||||| | || || | || |||||| | ||||| Sbjct 155 CGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCCCCTGGTTCAGAGCTGTA 96 Query 39735 CGAGGTAACCATGAGCAGATGATGATTGATGGGCTATCGGAGTATGGAAACGTTAACCAC 39794 || || ||||||||||| |||||||||||||| |||| ||| |||||||||||| ||| Sbjct 95 CGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGCGTGGAAACGTTAATCAC 36 Query 39795 TGGCTGGAAAACGGCGGCGTGTGGTTCTT 39823 |||||| || ||||| | |||||||| Sbjct 35 TGGCTGCTTAATGGCGGTGGCTGGTTCTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147417543149184