Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq63578 134 2e-26 seq52934 125 1e-23 seq28572 125 1e-23 seq7792 118 2e-21 seq13914 113 7e-20 seq14379 98.7 1e-15 seq77090 95.1 2e-14 >seq63578 Length=26733 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| | ||||||||||| || || || || || ||| || Sbjct 11820 ATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCC 11761 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| || ||||||||||||||||| ||||| || Sbjct 11760 GATACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAG 11701 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||||||||| ||| | |||||| | | ||| | |||||||| Sbjct 11700 CAACGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAAC 11641 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||| || || | |||||| | || || Sbjct 11640 ATTCAGAAAGAATCCACTCTTCACTTGGTACTCAGATTACGTGGTGG 11594 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| || || || || |||||||| || ||||||||| || Sbjct 11593 AATGCAAATTTTCGTGAAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTC 11534 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||||||||| |||||| |||||||||||||| || || || || || Sbjct 11533 CGATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCTGACCA 11474 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||||| || || ||||| | |||||| | | || ||| |||||||| Sbjct 11473 GCAGAGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGATTATAA 11414 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| || ||| | || |||||||| || || Sbjct 11413 TATTCAGAAGGAGTCCACCCTTCATTTGGTTTT 11381 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || ||||||| | |||||||||||||| || |||||||||||| || Sbjct 12277 AATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACTATCACGTTAGAAGTCGAACCATC 12218 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||| || ||| ||||| |||||||||||||| || || || || || Sbjct 12217 TGACACAATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCCGACCA 12158 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||| |||| |||||||| || | |||||| | ||||| || || || Sbjct 12157 GCAAAGATTAATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTGAGCGACTACAA 12098 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | ||||| |||||||| || Sbjct 12097 CATTCAGAAAGAGTCTACGCTGCATTTAGTTTT 12065 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || | || ||||||||||| || || ||||| ||| ||| Sbjct 12504 ATGCAAATTTTTCAAATTACGCTAACCGGAAAAACTATCACCTTGGAAGTGGAACCGTCT 12445 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| |||||||||| ||||| ||||| ||||||||||| || || || || Sbjct 12444 GATACTATTGAAAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATCCCACCCGACCAG 12385 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| |||| |||||||| || | ||||| | || || ||||||||| Sbjct 12384 CAGAGATTAATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACCTTGAGCGATTATAAT 12325 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || ||||||||||| ||| Sbjct 12324 ATCCAAAAAGAATCCACTCTTCATTTAGTTTTA 12292 Score = 113 bits (124), Expect = 7e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | ||||| | || |||||||| ||||| || ||||| ||| Sbjct 12735 AAGATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCA 12676 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || |||||| ||| || || |||||||||||||| || || || || Sbjct 12675 TCCGATACGATCGAAAACGTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGAC 12616 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | || |||| ||||||||| || | |||||| | | || || || || Sbjct 12615 CAGCAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTAC 12556 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||||| ||||| ||||||||||||| || Sbjct 12555 AATATTCAAAAAGAATCGACGCTTCATTTGGT 12524 >seq52934 Length=6696 Score = 125 bits (138), Expect = 1e-23 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || ||||| || || | ||||||||| ||| Sbjct 4155 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCG 4096 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| |||||||||||||| || ||||| || || Sbjct 4095 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAG 4036 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||||| ||||| | |||||| |||||| |||| ||||| | Sbjct 4035 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACA-- 3978 Query 156003 ATATCCAAAGAGG 156015 ||||||||| ||| Sbjct 3977 ATATCCAAAAAGG 3965 >seq28572 Length=14732 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || |||||||| ||||| |||||| | ||||| || | Sbjct 2972 AATGCAAATCTTCGTCAAGACCTTGACTGGTAAAACGATTACACTCGAAGTTGAGCCTAG 2913 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| |||||| || ||||||||||||||||| || || || || || || Sbjct 2912 CGACACTATTGAAAACGTCAAGGCCAAAATACAAGATAAAGAGGGAATTCCACCCGATCA 2853 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | || || || || ||||||||| |||||| | || || ||||| Sbjct 2852 ACAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGAAGAACTCTCTCTGACTATAA 2793 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||| ||||||||||| | |||| ||||| ||| Sbjct 2792 CATCCAAAAAGAATCGACCCTTCATTTAGTCCTTCGATTGAGAGGTGGT 2744 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| || || || ||||| || || | |||||||| | | Sbjct 2059 ATGCAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGT 2000 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || ||||| |||||||| || || || |||||||| || Sbjct 1999 GACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAG 1940 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||||| || || |||||||| ||||||| | || ||||||||| Sbjct 1939 CAACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAAT 1880 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||| ||||||||||| | |||| ||||||||| Sbjct 1879 ATTCAAAAAGAATCGACTCTTCATTTAGTCCTCCGATTGAGAGGCGGT 1832 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| || || || ||||| || || | |||||||| | Sbjct 3199 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGC 3140 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| || |||||||||||||| ||||| || || Sbjct 3139 GACACGATTGAAAACGTCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCAG 3080 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||||| |||||||| || ||||||||| ||||| | || || |||| Sbjct 3079 CAACGTCTGATTTTCGCCGGTAAACAACTCGAAGATGGTAGAACACTTTCGGACTATA-- 3022 Query 156003 ATATCCAAAGAG 156014 | ||||||| || Sbjct 3021 ACATCCAAAAAG 3010 >seq7792 Length=27931 Score = 118 bits (130), Expect = 2e-21 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 18180 CTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttt 18239 |||| || || ||||||||||||||||| || || || || ||||||| |||| |||| Sbjct 19175 CTTCGTCCCTTGATATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 19234 Query 18240 ttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACG 18299 | ||||||||||| | || ||||| | |||||||| || || || ||| || |||| Sbjct 19235 TAAGCCAAAATATTGCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACG 19294 Query 18300 CTATTAATCTTTCAGCAAAACT-GTATTTATTGCTCAG-TATCCATTTTTGTGCCCATTC 18357 |||| | ||||| ||||| | | ||| || |||| ||||||||| ||||| || Sbjct 19295 CTATGATCCTTTCTCCAAAAGTAGCATT--TTTATCAGCTATCCATTTCAACGCCCAGTC 19352 Query 18358 TCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA 18401 | ||| | ||| || || | || |||||||| |||| Sbjct 19353 TGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTGAACA 19396 >seq13914 Length=11729 Score = 113 bits (124), Expect = 7e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 18180 CTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttt 18239 |||| ||||| ||||||||||| || || || || | || ||||||| || ||||||| Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945 Query 18240 ttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC-GCACGCGAAC 18298 | ||||||||||||| || ||||| | ||||||||| ||||| || || ||| || || Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCA-GCAAAA 8004 Query 18299 GCTATTAATCTTTCAGCAAAA 18319 ||||| | |||||| ||||| Sbjct 8005 GCTATGATTCTTTCTCCAAAA 8025 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 18421 ATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGC 18480 |||||| || |||||||| || ||||| |||||||| ||||||| | || || | Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257 Query 18481 TATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTC 18540 || ||||| | ||||| |||| || || ||| ||| | || |||| | || Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317 Query 18541 TACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAAC 18591 || ||||| |||||||| ||||| |||| | ||||||||||| ||||| Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAAC 8368 >seq14379 Length=4834 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 76494 ATAATAATGATAATATAAGCAAGAAAATAACAGGTCAATATGTATCTAAAGAAATTATTT 76553 ||||||| || | |||| ||| || || ||||| |||||| | |||||| | || | Sbjct 4291 ATAATAAATATGAAATAAACAAACAAGTATCAGGTACATATGTCTGCAAAGAACTCATCT 4350 Query 76554 TAGATATTTCATCTTGGATTTCAATTGAATTTTATATGAAATGTAACGATATAATAATTA 76613 |||| ||| ||||||||||||| |||||| ||| |||||||||| ||||| || | | Sbjct 4351 TAGACATTGCATCTTGGATTTCTCCTGAATTCTATTTGAAATGTAATGATATTATTTTGA 4410 Query 76614 ATTATTATAAAAACGAATTTaaaaaaa 76640 | ||| | || | |||| | |||||| Sbjct 4411 AACATTTTGAACAAGAATATCAAAAAA 4437 >seq77090 Length=20911 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 155924 AGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAG 155983 |||||| ||||| || |||||| | ||||||| || |||||||| || |||||| | Sbjct 10507 AGGCATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACG 10566 Query 155984 AACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAG 156043 |||| | || ||||| || || ||||| ||||| | |||||||||||| |||| || Sbjct 10567 AACTCTTTCTGATTACAACATCCAAAAAGAATCGACGTTACATTTAGTGTTACGATTGAG 10626 Query 156044 AGGCGGTG-TAAAA 156056 ||| || | ||||| Sbjct 10627 AGGTGGGGCTAAAA 10640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731136596717600