Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq35294 104 7e-17 seq59517 84.2 6e-11 >seq35294 Length=18244 Score = 104 bits (114), Expect = 7e-17 Identities = 227/334 (68%), Gaps = 12/334 (4%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGA----GAATTTT-GTCTCGCAA 289084 |||||||| |||||||||||||| ||||||||||| ||| || |||| | | ||| Sbjct 16094 CCAACAGCGTCAATTTCGTCAATAAAAATCACACAAGGAGCTCGACTTTTAGCCGCGC-- 16151 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 || ||||| || | |||||| || || | ||||| | || || ||||||| | Sbjct 16152 -TG--AATAAATCGCGAACACGGCGAGCACCTTGTCCAACTAATATCTCATCAAATTCTG 16208 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | | | | |||| || | ||| ||||| || || || |||| || | | || Sbjct 16209 AACCAGCTGCGTGAAAAAAAGGAACACCGGCTTCACCAGCCACAGCCCGAGCTAATAATG 16268 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCA 289263 | || |||||||| || ||||| | | || | || ||||| | ||| | || ||| Sbjct 16269 TTTTTCCTGTTCCCGGCGGTCCTACCAGTAATGCACCTTTTGGAAGTTTACCACCGAGC- 16327 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | | | || || || | |||||||| || || ||||| | |||||| | || || Sbjct 16328 GCTGAAAACTTTTCCGGATTTTTTAAAAACTCCACGATTTCTTTAAGTTCTTGCTTAGCT 16387 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGTAATAT 289357 |||||| ||| || ||| ||||||| |||| Sbjct 16388 TCATCAACACCTTTGACGTCATCAAAAGTGATAT 16421 >seq59517 Length=19559 Score = 84.2 bits (92), Expect = 6e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 ||||| || ||||| ||||| | || ||||||| |||| || ||| || | |||| Sbjct 13338 TTGCCTCCTTGATCGACATATCTTGCTACGCTATTGAACACACGTAACATGGGCACAATA 13279 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| || |||||||| || |||| | || | |||| |||||| || Sbjct 13278 CCATTAGATACTCCATTGGTACCAGTTATATAGCTATTAGTAGCTCGAATATTATGTATG 13219 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 |||||||| | ||||| | |||| || || |||| ||| | | ||||| ||| Sbjct 13218 TGTAGTCCTACGCCACCAGCGGATTTGGAGATCAGAGCACATGTAGTAAGGGTATTAAAA 13159 Query 156240 ATACCTTCAATAGAATCATCTTCCAT 156265 |||||||||||| ||| || ||||| Sbjct 13158 ATACCTTCAATACTATCGTCCTCCAT 13133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470301707902082