Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq28572 102 6e-17 seq63578 82.4 6e-11 >seq28572 Length=14732 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| ||||| ||||||||||| || ||||| ||| || || Sbjct 3199 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGC 3140 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||| ||| |||||||||||| | || ||| ||| Sbjct 3139 GACACGATTGAAAACGTCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCAG 3080 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || |||| || |||||||| || || || | | |||| | ||||||| ||| Sbjct 3079 CAACGTCTGATTTTCGCCGGTAAACAACTCGAAGATGGTAGAACACTTTCGGACTATAAC 3020 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || ||||| || ||||| || || |||| Sbjct 3019 ATCCAAAAAGAATCTACTTTACATTTGGT 2991 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| || ||||| || ||||| || || |||| ||| || | Sbjct 2516 AATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATCACACTCGAGGTCGAGCCTAG 2457 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || || ||| ||||| || || | ||| ||||| Sbjct 2456 TGACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCCCCTGATCA 2397 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | ||||| | ||| |||||||| || || || | | ||| | ||||||| || Sbjct 2396 GCAACGTCTTATCTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCGGACTATAA 2337 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| ||||| || || || ||||| | || | ||||| |||| || Sbjct 2336 CATCCAAAAAGAATCGACATTGCATTTAGTTCTCCGATTGAGAGGTGG 2289 >seq63578 Length=26733 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 || || |||||||| || || |||||| | || || ||||||||||| | ||| || Sbjct 12738 TTCAAGATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAA 12679 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | |||||| ||| | || ||| |||||| ||||||||||| | || Sbjct 12678 CCATCCGATACGATCGAAAACGTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCT 12619 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 || ||||| | | |||| ||| |||||||| |||| || | | ||| || ||| Sbjct 12618 GACCAGCAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGAC 12559 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| |||||||| || || ||| | || |||| Sbjct 12558 TACAATATTCAAAAAGAATCGACGCTTCATTTGGT 12524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398486018653954