Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq28572 154 2e-32 seq63578 138 2e-27 seq52934 125 1e-23 seq77090 93.3 7e-14 seq46443 93.3 7e-14 >seq28572 Length=14732 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || ||||| ||||| | || || || | || || Sbjct 2970 TGCAAATCTTCGTCAAGACCTTGACTGGTAAAACGATTACACTCGAAGTTGAGCCTAGCG 2911 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| |||| || || ||||||||| |||||| || |||||||||||||||| Sbjct 2910 ACACTATTGAAAACGTCAAGGCCAAAATACAAGATAAAGAGGGAATTCCACCCGATCAAC 2851 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || |||||| | || ||| ||||| | | || ||||| | Sbjct 2850 AACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGAAGAACTCTCTCTGACTATAACA 2791 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||||||||| | |||||||| | ||||| ||||| |||| Sbjct 2790 TCCAAAAAGAATCGACCCTTCATTTAGTCCTTCGATTGAGAGGTGGTA 2743 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||||||| |||||||| || | || || || | || | Sbjct 2058 TGCAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGTG 1999 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||||| ||| ||| || || ||||| || || || | Sbjct 1998 ACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAGC 1939 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || || |||||| | || || ||||| | | |||||||||| Sbjct 1938 AACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAATA 1879 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||||||| | |||||||| | ||||| ||||| |||| Sbjct 1878 TTCAAAAAGAATCGACTCTTCATTTAGTCCTCCGATTGAGAGGCGGTA 1831 Score = 132 bits (146), Expect = 8e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| ||||| || ||||| || ||| | || || || | || || Sbjct 3198 TGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGCG 3139 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || ||||| || |||||||||||| || || || || | Sbjct 3138 ACACGATTGAAAACGTCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCAGC 3079 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || ||||| || ||||||||| | || ||| |||||| | | || ||||| | Sbjct 3078 AACGTCTGATTTTCGCCGGTAAACAACTCGAAGATGGTAGAACACTTTCGGACTATAACA 3019 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| ||| | ||||| || | || | |||||||| Sbjct 3018 TCCAAAAAGAATCTACTTTACATTTGGTTCTCCGTCTCAGAGGAGG 2973 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || ||||| || ||||| || || | || || || | || | Sbjct 2514 TGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATCACACTCGAGGTCGAGCCTAGTG 2455 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||||| ||| ||| || || ||||| || ||||| | Sbjct 2454 ACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCCCCTGATCAGC 2395 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| ||||||||| | || ||| ||||| | | || ||||| | Sbjct 2394 AACGTCTTATCTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCGGACTATAACA 2335 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||||||||| | |||||||| | ||||| ||||| |||| Sbjct 2334 TCCAAAAAGAATCGACATTGCATTTAGTTCTCCGATTGAGAGGTGGTA 2287 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| ||||| || ||||| || ||| | || ||||| | | | Sbjct 2742 TGCAGATTTTCGTCAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTAGAGCCCAGTG 2683 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || |||||| || ||| || || ||||| || ||||||| Sbjct 2682 ACACCATCGAAAATGTCAAGGCTAAAATTCAGGATAAGGAGGGAATTCCCCCTGATCAAC 2623 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || ||||||||| | || || |||| | | ||||| || | Sbjct 2622 AACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGATTACAACA 2563 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | |||||||||||||| | ||||| || | || | ||||||| Sbjct 2562 TCCAAAAAGAATCGACATTACATTTGGTTCTCCGTCTCCGAGGAGG 2517 >seq63578 Length=26733 Score = 138 bits (152), Expect = 2e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || || || |||| |||||||| || || | || || |||| | Sbjct 12503 TGCAAATTTTTCAAATTACGCTAACCGGAAAAACTATCACCTTGGAAGTGGAACCGTCTG 12444 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| || ||| ||||| ||| ||||||||||| |||||||| || | Sbjct 12443 ATACTATTGAAAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATCCCACCCGACCAGC 12384 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | ||||| || ||||||||||| || || | | || || | |||||||||| Sbjct 12383 AGAGATTAATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACCTTGAGCGATTATAATA 12324 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | |||||||| ||||| Sbjct 12323 TCCAAAAAGAATCCACTCTTCATTTAGTTTTACG 12290 Score = 131 bits (144), Expect = 3e-25 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| | || |||||||| |||||| | || || |||| || Sbjct 12731 TGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCATCCG 12672 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || ||| || || ||| ||||||||| || ||||| || || | Sbjct 12671 ATACGATCGAAAACGTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGACCAGC 12612 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||||||||| || ||| | || || | || || |||| Sbjct 12611 AACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTACAATA 12552 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTGA 146271 | |||||||||||||| | ||||| || |||| | | || |||| |||| || Sbjct 12551 TTCAAAAAGAATCGACGCTTCATTTGGTCCTACGTCTTCGCGGCGGTATGCAAATTTTTC 12492 Query 146272 AAATT 146276 ||||| Sbjct 12491 AAATT 12487 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| || || | || || |||| | Sbjct 12275 TGCAAATTTTCGTTAAAACGCTCACTGGAAAAACTATCACGTTAGAAGTCGAACCATCTG 12216 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||||||| ||||| ||| ||||||||| || |||||||| || | Sbjct 12215 ACACAATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAGC 12156 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || |||||||||||||| ||| | | || || | || || || | Sbjct 12155 AAAGATTAATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTGAGCGACTACAACA 12096 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||| || || | |||||||| || || || | || |||| Sbjct 12095 TTCAGAAAGAGTCTACGCTGCATTTAGTTTTGCGTCTACGTGGTGGTA 12048 Score = 123 bits (136), Expect = 4e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| || || | || || |||| || Sbjct 11819 TGCAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCCG 11760 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| || |||||||||||| ||||| || || | Sbjct 11759 ATACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAGC 11700 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| |||||||| || || ||| | || | | |||||||| | Sbjct 11699 AACGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAACA 11640 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| ||| | || || ||| | ||||| | || || Sbjct 11639 TTCAGAAAGAATCCACTCTTCACTTGGTACTCAGATTACGTGGTGG 11594 Score = 120 bits (132), Expect = 5e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| | || || ||||| || || | || ||||| | || Sbjct 12047 TGCAAATTTTCGTAAAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAGAGCCATCCG 11988 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| || || ||| |||||||| ||||||||||| || | Sbjct 11987 ATACAATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCCGACCAGC 11928 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||| || ||||||||||| || || | ||||||| ||||| |||| Sbjct 11927 AGCGATTAATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATTACAATA 11868 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || | ||||| || ||||| Sbjct 11867 TCCAAAAGGAATCCACCCTACATTTGGTCTTACG 11834 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || || || ||||| | || || |||| || Sbjct 11591 TGCAAATTTTCGTGAAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTCCG 11532 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| |||||| ||| ||||||||| || || || || || | Sbjct 11531 ATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCTGACCAGC 11472 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | ||||| || || || ||||| || ||| | ||||||| |||||||||| Sbjct 11471 AGAGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGATTATAATA 11412 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || || || || | ||||| || || || Sbjct 11411 TTCAGAAGGAGTCCACCCTTCATTTGGTTTTGCG 11378 >seq52934 Length=6696 Score = 125 bits (138), Expect = 1e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || ||||| || ||| | || || |||| | | Sbjct 4154 TGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCGG 4095 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||||||| |||||| ||| ||||||||| || || ||||| || | Sbjct 4094 ATACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAGC 4035 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || || || ||||| || ||| |||||| || | ||||| |||| Sbjct 4034 AACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAATA 3975 Query 146212 TACAAAAAG 146220 | ||||||| Sbjct 3974 TCCAAAAAG 3966 >seq77090 Length=20911 Score = 93.3 bits (102), Expect = 7e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||||||||| || ||||||||| | | ||||| || ||||| ||| | || ||| | Sbjct 10507 AGGCATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACG 10566 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| | | ||||| || || |||||||||||||| | |||||||| |||||||| || Sbjct 10567 AACTCTTTCTGATTACAACATCCAAAAAGAATCGACGTTACATTTAGTGTTACGATTGAG 10626 Query 146252 AGGAGG 146257 ||| || Sbjct 10627 AGGTGG 10632 >seq46443 Length=17015 Score = 93.3 bits (102), Expect = 7e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||||||||| || || |||||| | | |||||||| ||||||||| | || ||| | Sbjct 12820 AGGCATTCCTCCTGACCAACAACGTTTGATTTTTGCTGGTAAACAACTCGAAGATGGACG 12761 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 || | | |||||||| || ||||||||||| ||| | ||||||||||| |||| || Sbjct 12760 TACCCTTTCCGATTATAACATCCAAAAAGAATCTACTCTGCATTTAGTATTGAGATTGAG 12701 Query 146252 AGGAGG 146257 ||| || Sbjct 12700 AGGTGG 12695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785376440347120