Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq28572 125 7e-24 seq63578 118 1e-21 >seq28572 Length=14732 Score = 125 bits (138), Expect = 7e-24 Identities = 123/156 (79%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||| || || || ||| |||| || || |||||||| |||||||||||||| || Sbjct 3045 TCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTA 3104 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||||| ||||| | |||| ||||||| | ||||| || |||| |||| Sbjct 3105 TC-CTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGAT 3163 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||||| | ||||||||||| |||||||| Sbjct 3164 GGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 107 bits (118), Expect = 2e-18 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||||| || || || || || |||||||||||| | ||| || | ||| |||| Sbjct 3222 AAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCC--GTCTTCGA 3279 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || ||| | || || || || || || ||||| || |||||||| || ||| Sbjct 3280 GTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTTATC-TTGA 3338 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||||| | || | ||| || | || || || |||| ||||| |||||| Sbjct 3339 ATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACTTCGAGGGTGATGGTTTTA 3398 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| ||||||||||| |||||||| Sbjct 3399 CCAGTCAACGTTTTTACGAAGATCTGCAT 3427 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513 ||||| | || ||||||||||| ||||||||||| | || || | || || || Sbjct 1626 AAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTACCA-TCTTCAAG 1684 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | || ||||| ||||||||||| ||||| ||||| ||| Sbjct 1685 CTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCTTTGTCTTGGAT 1744 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | |||||| | || || || |||| || | ||||| || Sbjct 1745 CTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGAGTAATCGTTTTACC 1804 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| || ||||| Sbjct 1805 GGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||||| || || ||||| || || ||||||||| | || || || || |||| Sbjct 2538 AAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCG--TCTTCGA 2595 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| |||| | || || || || || || || || ||||| || ||| Sbjct 2596 GTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCC-TGA 2654 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || |||| | || | ||||| ||||||| || |||| |||| |||||| Sbjct 2655 ATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTA 2714 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || | ||||| |||||||||||||| Sbjct 2715 CCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCT 133515 ||||| || || || || || |||||||||||| | | | | | | || ||||| | Sbjct 2084 ATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCA-TCTTCGAGTT 2142 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || |||| | || || || || || || || |||||||| || ||| | Sbjct 2143 GTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGGATTT 2202 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||| ||||||| || |||| |||| |||||| || | Sbjct 2203 TAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCCG 2262 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| || ||||| Sbjct 2263 TTAGGGTTTTAACGAAGATTTGCAT 2287 >seq63578 Length=26733 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| |||||| || || || ||||||||||||| | |||| ||| || | Sbjct 11843 AAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCGTCTTCCAAT 11902 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| |||| | |||||||||||||| || || ||||| ||||| ||| Sbjct 11903 TGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTGTC-TTGAAT 11961 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || |||| | | | ||| | || |||| ||||| || || | |||| ||||| || Sbjct 11962 CTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGATAGTTTTACC 12021 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || |||||||||||||| ||||| Sbjct 12022 GGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | ||||| ||||| || ||||| ||||||| || || |||| ||| || | Sbjct 12299 AAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTCAAGGT--ACGACCGTCTTCCA 12356 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 || || || ||| |||| | | |||||||||||| ||||||||||| ||||| ||| Sbjct 12357 ATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGGATGCCTTCTTTGTC-TTGA 12415 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || || | | |||| || || | || ||||| || | ||||| ||||| Sbjct 12416 ATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACTTCCAAGGTGATAGTTTTT 12475 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| ||||| Sbjct 12476 CCGGTTAGCGTAATTTGAAAAATTTGCAT 12504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || ||||| || |||||||| |||| || ||| | | | || || | Sbjct 12527 AAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCA-TCTTCCAA 12585 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | ||| |||||||| || ||||| ||||| || || || Sbjct 12586 TTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGAAT 12645 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | || | ||| |||| || || || || | || | |||||| || Sbjct 12646 CTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGTTTTTCC 12705 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| || ||||| Sbjct 12706 GGTAAGAGTTTTTACGAAGATTTGCAT 12732 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||||||||| || ||||| |||| || || ||| | || || | Sbjct 12071 AAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCA-TCTTCTAA 12129 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| |||| | | ||||||||||| ||||| ||||| || || ||| Sbjct 12130 TTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGGAT 12189 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||| || | | || | ||||| | || || || || | |||| ||||| | Sbjct 12190 -TTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACTTCTAACGTGATAGTTTTTC 12248 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||| |||||||| ||||| Sbjct 12249 CAGTGAGCGTTTTAACGAAAATTTGCAT 12276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482935046694640