Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq28572 125 7e-24
seq63578 118 1e-21
>seq28572
Length=14732
Score = 125 bits (138), Expect = 7e-24
Identities = 123/156 (79%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| ||||| || || || ||| |||| || || |||||||| |||||||||||||| ||
Sbjct 3045 TCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTA 3104
Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| ||| ||||| ||||| | |||| ||||||| | ||||| || |||| ||||
Sbjct 3105 TC-CTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGAT 3163
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||||||||||| | ||||||||||| ||||||||
Sbjct 3164 GGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199
Score = 107 bits (118), Expect = 2e-18
Identities = 152/209 (73%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512
||||||| || || || || || |||||||||||| | ||| || | ||| ||||
Sbjct 3222 AAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCC--GTCTTCGA 3279
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
| ||||| || ||| | || || || || || || ||||| || |||||||| || |||
Sbjct 3280 GTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTTATC-TTGA 3338
Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| | ||||| | || | ||| || | || || || |||| ||||| ||||||
Sbjct 3339 ATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACTTCGAGGGTGATGGTTTTA 3398
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| |||| ||||||||||| ||||||||
Sbjct 3399 CCAGTCAACGTTTTTACGAAGATCTGCAT 3427
Score = 105 bits (116), Expect = 6e-18
Identities = 149/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513
||||| | || ||||||||||| ||||||||||| | || || | || || ||
Sbjct 1626 AAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTACCA-TCTTCAAG 1684
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || ||| |||| | || ||||| ||||||||||| ||||| ||||| |||
Sbjct 1685 CTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCTTTGTCTTGGAT 1744
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | || | |||||| | || || || |||| || | ||||| ||
Sbjct 1745 CTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGAGTAATCGTTTTACC 1804
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || || ||||| || |||||
Sbjct 1805 GGTCAAGGTCTTAACGAAGATTTGCAT 1831
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512
||||||| || || ||||| || || ||||||||| | || || || || ||||
Sbjct 2538 AAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCG--TCTTCGA 2595
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
| || || || ||| |||| | || || || || || || || || ||||| || |||
Sbjct 2596 GTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCC-TGA 2654
Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| || |||| | || | ||||| ||||||| || |||| |||| ||||||
Sbjct 2655 ATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTA 2714
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || | ||||| ||||||||||||||
Sbjct 2715 CCAGTTAAGGTTTTGACGAAAATCTGCAT 2743
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCT 133515
||||| || || || || || |||||||||||| | | | | | | || ||||| |
Sbjct 2084 ATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCA-TCTTCGAGTT 2142
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
| ||||| || |||| | || || || || || || || |||||||| || ||| |
Sbjct 2143 GTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGGATTT 2202
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | || | ||||| ||||||| || |||| |||| |||||| || |
Sbjct 2203 TAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCCG 2262
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| || ||||| ||||| || |||||
Sbjct 2263 TTAGGGTTTTAACGAAGATTTGCAT 2287
>seq63578
Length=26733
Score = 118 bits (130), Expect = 1e-21
Identities = 152/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
||||||| |||||| || || || ||||||||||||| | |||| ||| || |
Sbjct 11843 AAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCGTCTTCCAAT 11902
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|| || || ||| |||| | |||||||||||||| || || ||||| ||||| |||
Sbjct 11903 TGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTGTC-TTGAAT 11961
Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|| |||| | | | ||| | || |||| ||||| || || | |||| ||||| ||
Sbjct 11962 CTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGATAGTTTTACC 12021
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||| || |||||||||||||| |||||
Sbjct 12022 GGTGAGCGTTTTTACGAAAATTTGCAT 12048
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
||||| | ||||| ||||| || ||||| ||||||| || || |||| ||| || |
Sbjct 12299 AAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTCAAGGT--ACGACCGTCTTCCA 12356
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|| || || ||| |||| | | |||||||||||| ||||||||||| ||||| |||
Sbjct 12357 ATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGGATGCCTTCTTTGTC-TTGA 12415
Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| || || | | |||| || || | || ||||| || | ||||| |||||
Sbjct 12416 ATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACTTCCAAGGTGATAGTTTTT 12475
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || || || ||||| |||||
Sbjct 12476 CCGGTTAGCGTAATTTGAAAAATTTGCAT 12504
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || || ||||| || |||||||| |||| || ||| | | | || || |
Sbjct 12527 AAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCA-TCTTCCAA 12585
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| || || || |||| | ||| |||||||| || ||||| ||||| || || ||
Sbjct 12586 TTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGAAT 12645
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| |||| | || | ||| |||| || || || || | || | |||||| ||
Sbjct 12646 CTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGTTTTTCC 12705
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||| |||||||||||||| || |||||
Sbjct 12706 GGTAAGAGTTTTTACGAAGATTTGCAT 12732
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || ||||||||||| || ||||| |||| || || ||| | || || |
Sbjct 12071 AAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCA-TCTTCTAA 12129
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| || || ||| |||| | | ||||||||||| ||||| ||||| || || |||
Sbjct 12130 TTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGGAT 12189
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||||| || | | || | ||||| | || || || || | |||| ||||| |
Sbjct 12190 -TTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACTTCTAACGTGATAGTTTTTC 12248
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| || || ||||| |||||||| |||||
Sbjct 12249 CAGTGAGCGTTTTAACGAAAATTTGCAT 12276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482935046694640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |