Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq19381 96.9 8e-15 seq13914 86.0 1e-11 seq59517 84.2 5e-11 >seq19381 Length=19756 Score = 96.9 bits (106), Expect = 8e-15 Identities = 188/277 (68%), Gaps = 3/277 (1%) Strand=Plus/Plus Query 110653 ATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACG 110712 ||||||| | | || || | |||| ||| || |||| ||| | | || | ||| Sbjct 8916 ATATCGCTGGAACAAACGGCGTATCAAATGGTCTAATTCCGATGCTTCGCGTATACAATA 8975 Query 110713 ACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATC 110769 |||| || | ||| ||| | ||||| || || | || || | |||||||| || Sbjct 8976 ACACAGCCAGATACGTGGACCAAGGAGGCAACAAAAGACCGGGTGCTTTTGCTATTTACT 9035 Query 110770 TCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTG 110829 | |||||||||||| | ||||| |||||||| ||||| || || |||||| || | Sbjct 9036 TGGAACCTTGGCATGCGGATATTTTTGAATTTTTAGAGCTGCGAAAAAATTCTGGTAAAG 9095 Query 110830 AAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAAC 110889 |||| | || | ||||||||||| ||||||||||| | || |||||||| | Sbjct 9096 AAGAGTCTCGCGCTAGGGATTTATTTTACGCAATGTGGATCCCCGACGAATTCATGAGAA 9155 Query 110890 GTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 | || || || ||| | ||| | | |||||||| Sbjct 9156 GGGTCGAAAAAGATGAAAAATGGAGTTTGATGTGTCC 9192 >seq13914 Length=11729 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTA 131855 |||| | ||||| || ||||| | || ||||| | || | ||| | |||| Sbjct 8077 TTAAGAGAAAAGCTGACTGGGCGTTGAAGTGGATAAATGACAAAAACGCGACTTTTGGAG 8018 Query 131856 CAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTA 131915 |||| | ||||||||||| ||| |||||||| |||||||| || ||| ||| | Sbjct 8017 AAAGAATCATAGCTTTTGCTGCTGTCGAAGGTATTTTCTTTTCTGGAAGTTTTGCTGCGA 7958 Query 131916 TCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCT 131975 | ||||||||||| || | || | ||||||||||| | || |||| |||| || | Sbjct 7957 TATTTTGGCTTAAAAAAAGGGGCCTAATGCCTGGACTGACTTTCAGCAATGAATTAATAT 7898 Query 131976 CGAGAGATGAAG 131987 | ||||| |||| Sbjct 7897 CAAGAGACGAAG 7886 >seq59517 Length=19559 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 111036 TGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT 111095 |||||| ||| | || || ||| ||||||| ||||| ||||| || ||||| |||||| Sbjct 13767 TGGTTCGCAATTTTAGACTCTCAAATTGAAACAGGAACACCTTACATGTTGTACAAAGAT 13826 Query 111096 CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 |||| | ||||| ||||| ||||||||||| ||||| |||||||||||| Sbjct 13827 GCCTGTAATAGAAAATCCAATCATCAAAATTTAGGAACTATTAAAAGTAGTAATTTGTG 13885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185590447348946