Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq63578 141 6e-29 seq28572 131 1e-25 seq52934 113 3e-20 seq77090 96.9 2e-15 seq46443 91.5 1e-13 >seq63578 Length=26733 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||||| ||||||||||| ||| || ||||| || ||||||||| Sbjct 11821 ACCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCT 11880 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| |||| ||||||||||| ||||| ||||| || |||||||| || | || Sbjct 11881 TAACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGG 11940 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || | || ||||| || | || ||| || || | Sbjct 11941 AATACCTTCTTTGTCTTGAATCTT-GGCTTTAACATTCTCGATTGTATCGGATGGCTCTA 11999 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| |||||||| || | ||||||||| || || |||||| Sbjct 12000 CTTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCATA 12049 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | |||||| || ||||| |||||| |||||||| || || |||||| Sbjct 12278 CCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTC 12337 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| ||||||||||| ||||| ||||| || | |||||| || | || Sbjct 12338 AAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGG 12397 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| |||| || | || | || || | |||||| Sbjct 12398 ATGCCTTCTTTGTCTTGAATTTTGGCTTTC-ACGTTTTCAATAGTATCAGACGGTTCCAC 12456 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || |||| ||| || ||| || |||||| Sbjct 12457 TTCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCATA 12505 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||| |||||||| || || |||||||| || ||||| ||| | |||||| | Sbjct 12517 ACGTAGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCC 12576 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||||||||| ||||||||||| || || ||||| || | || | |||||||| Sbjct 12577 ATCTTCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTT 12636 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||| || | || || | || | || ||| || ||| || || | || | Sbjct 12637 ATCTTGAATCTT-GGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAA 12695 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || | |||||||| ||||| ||||| Sbjct 12696 TGGTTTTTCCGGTAAGAGTTTTTACGAAGATTTGCAT 12732 >seq28572 Length=14732 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | |||||||||| ||| || ||||| || ||||||||||| Sbjct 3200 ACCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGA 3259 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | ||| ||||| || || |||| ||| || ||||| | || Sbjct 3260 AAGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGG 3319 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||||||| | | || | || | || || || | ||| | Sbjct 3320 AATACCTTCCTTATCTTGAATTTTC-GCCTTGACGTTTTCGATCGTATCACTCGGTTCAA 3378 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| || ||||||||||| ||||||||||| Sbjct 3379 CTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCAT 3427 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||||||||| ||| |||||||| ||||| || || || Sbjct 2973 CCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAA 3032 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | |||||| ||||| ||||||| ||| ||||| || | || Sbjct 3033 AGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 3092 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | |||||||| || |||||| || | || | ||| |||||||| | || || Sbjct 3093 ATGCCTTCTTTATCCTGAATTTT-TGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGAC 3151 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || ||||| |||||||| |||||||||||| Sbjct 3152 TTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCATA 3200 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| || | ||| | ||||| ||| || ||||| || ||||||||||| Sbjct 2060 ACCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGA 2119 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || | |||||| ||||||||||| ||||| || |||||| | || Sbjct 2120 GAGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGG 2179 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||||| | | || | || | |||||| || | || | Sbjct 2180 AATTCCTTCCTTATCTTGGATTTT-AGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTA 2238 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| |||| ||||| || ||||| |||||| Sbjct 2239 CTTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCATA 2288 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||||||||| || |||||||| |||||||||||||| Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | |||||| ||||| ||||| ||||| || ||||| | || Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || |||||| | | |||| || | |||||| || | || || Sbjct 2637 ATTCCCTCCTTATCCTGAATTTT-AGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| |||||||| ||||| ||||| || || ||||||||| Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCATA 2744 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| || | || ||||| ||||| |||||||| || || ||||| || Sbjct 1832 ACCGCCTCTCAATCGGAGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGA 1891 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | |||| || | |||||||||||| ||||| | ||| ||||| ||| | || Sbjct 1892 GAGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGG 1951 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||||| | | |||| || | ||||| || | || | Sbjct 1952 AATTCCCTCCTTATCTTGGATTTT-GGCCTTGACATTTTCGATTGTGTCACTAGGCTCGA 2010 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||||||||| ||||| || || || |||||| Sbjct 2011 CTTCGAGGGTGATTGTTTTACCTGTTAAGGTTTTGACGAAAATTTGCATA 2060 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || ||||||||||| || || |||||| || || |||||||| || || || | | Sbjct 1617 CGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTACCA 1676 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | || |||||||| ||||| ||||| |||||||| | || | ||||||||| Sbjct 1677 TCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCTTTG 1736 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || || | | || | || | ||||||||| | ||| || || | || || Sbjct 1737 TCTTGGATCTT-AGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGAGTAAT 1795 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||||||| || || || || || ||||| |||||| Sbjct 1796 CGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCATA 1832 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | || ||||| | || |||||||| ||||| || || || Sbjct 2288 ACCACCTCTCAATCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGA 2347 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || || | |||||| || ||||| || | ||| |||||||| | || Sbjct 2348 AAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGG 2407 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || |||||| | | |||| || | ||||| || | || | Sbjct 2408 AATTCCCTCCTTATCTTGAATTTT-GGCCTTGACATTTTCGATCGTGTCACTAGGCTCGA 2466 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| ||||| || || || || || ||||| Sbjct 2467 CCTCGAGTGTGATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 2515 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | || ||||| || || |||||||| ||||| || || || Sbjct 2744 ACCACCTCTCAATCGAAGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGA 2803 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | |||||| || || || || | ||| || ||||| | || Sbjct 2804 GAGAGTTCTTCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGG 2863 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || ||||| | | || | || | |||||||| | || | Sbjct 2864 AATTCCCTCTTTATCTTGTATTTT-GGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAA 2922 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || ||||||||||| || || || || || ||||| ||||| Sbjct 2923 CTTCGAGTGTAATCGTTTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 2971 >seq52934 Length=6696 Score = 113 bits (124), Expect = 3e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| || ||||||||||| || || | | || |||||||| |||||||| || | Sbjct 3966 CTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 4025 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 ||||||| ||||| || | || | ||||||||| || |||||| | || |||| Sbjct 4026 TCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTT-AGCTTTTACATTT 4084 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | || || | ||| || || | |||||||||||||| |||| ||||| || Sbjct 4085 TCAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACG 4144 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 4145 AAGATCTGCAT 4155 >seq77090 Length=20911 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| |||||||| ||||||| || |||||||| ||||||||||| || Sbjct 10632 CCACCTCTCAATCGTAACACTAAATGTAACGTCGATTCTTTTTGGATGTTGTAATCAGAA 10573 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 || || ||| | || || | ||| || || || ||||||||||| || ||||| Sbjct 10572 AGAGTTCGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGTTGTTGATC 10520 >seq46443 Length=17015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || ||||| ||||| |||||||| ||||| |||||||| Sbjct 12695 CCACCTCTCAATCTCAATACTAAATGCAGAGTAGATTCTTTTTGGATGTTATAATCGGAA 12754 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 || || ||| | || || | |||||| || |||||||||||||| || || || Sbjct 12755 AGGGTACGTCCATCTTCGAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTC 12807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328381967253120