Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq63578 150 4e-31 seq52934 116 9e-21 seq28572 113 1e-19 >seq63578 Length=26733 Score = 150 bits (166), Expect = 4e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| |||||||| ||||| || ||||| ||| ||||||||| ||||| Sbjct 12261 AAAACGCTCACTGGAAAAACTATCACGTTAGAAGTCGAACCATCTGACACAATCGAAAAT 12202 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| |||||| || ||||| |||||||| || || ||| |||||| | || || Sbjct 12201 GTAAAAGCAAAA-ATCCAAGATAAAGAAGGTATCCCACCCGACCAGCAAAGATTAATTTT 12143 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || || |||||||| | |||||| ||| |||||| | ||||||||||| Sbjct 12142 CGCCGGTAAACAATTAGAAGATGGTCGTACTTTGAGCGACTACAACATTCAGAAAGAGTC 12083 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || || | |||||| | || || Sbjct 12082 TACGCTGCATTTAGTTTTGCGTCTACG 12056 Score = 129 bits (142), Expect = 1e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 206178 ATTTTGCAAA--ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACA 206235 ||||| |||| ||||| || |||||||| ||||| |||||||||||| ||||| || Sbjct 12498 ATTTTTCAAATTACGCTAACCGGAAAAACTATCACCTTGGAAGTGGAACCGTCTGATACT 12439 Query 206236 GTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAG 206294 | ||| || ||||| ||| |||||||| |||||||| || || ||| || || Sbjct 12438 ATTGAAAACGTGAAAGCCAAA-ATTCAAGACAAAGAAGGCATCCCACCCGACCAGCAGAG 12380 Query 206295 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 206354 | | || |||||||| || || |||||||| || | || ||| |||||| || |||| Sbjct 12379 ATTAATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACCTTGAGCGATTATAATATCCA 12320 Query 206355 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || |||||||| | ||||| | |||||| Sbjct 12319 AAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGA 12283 Score = 120 bits (132), Expect = 7e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| |||||||| || || ||||| |||||| || || || | ||| Sbjct 11805 AAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCCGATACCATTGAAAAT 11746 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || |||||||| || || ||| ||| || | ||||| Sbjct 11745 GTCAAAGCTAAA-ATTCAGGATAAAGAAGGCATACCACCAGACCAGCAACGATTGATCTT 11687 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || |||||||||||||| | ||| || ||||| ||| | |||||||| || Sbjct 11686 TGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAACATTCAGAAAGAATC 11627 Query 206364 TACTCTTCAC 206373 ||||||||| Sbjct 11626 CACTCTTCAC 11617 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || || |||||||| ||| || || || |||| Sbjct 11577 AAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTCCGATACCATCGAGAAC 11518 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || ||| ||| || ||| | || || Sbjct 11517 GTGAAAGCTAAA-ATTCAAGATAAAGAAGGTATCCCGCCTGACCAGCAGAGATTGATTTT 11459 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| |||||||| ||||||||||| | || || |||||| || | ||||| ||||| Sbjct 11458 CGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGATTATAATATTCAGAAGGAGTC 11399 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | |||||| | ||||| Sbjct 11398 CACCCTTCATTTGGTTTTGCGTCTTCG 11372 Score = 104 bits (114), Expect = 6e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || ||||||||||| ||| || || || ||||| Sbjct 12717 AAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCATCCGATACGATCGAAAAC 12658 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| ||||||||||| || ||| ||| | | || || Sbjct 12657 GTCAAAGCCAA-GATTCAAGATAAAGAAGGAATCCCACCTGACCAGCAACGGTTAATTTT 12599 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || ||||||||||| | || ||| ||| ||||| | || ||||| || Sbjct 12598 TGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTACAATATTCAAAAAGAATC 12539 Query 206364 TACTCTTCA 206372 || ||||| Sbjct 12538 GACGCTTCA 12530 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| || ||||| ||||| |||||||| || || || ||| |||| Sbjct 12033 AAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAGAGCCATCCGATACAATCGAGAAT 11974 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| ||| || ||| || || | || || Sbjct 11973 GTTAAAGCCAA-GATTCAAGACAAAGAAGGTATTCCACCCGACCAGCAGCGATTAATTTT 11915 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || |||||||| || | || || ||||||||| |||| || || || Sbjct 11914 CGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATTACAATATCCAAAAGGAATC 11855 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || || | ||||| Sbjct 11854 CACCCTACATTTGGTCTTACGTCTTCG 11828 >seq52934 Length=6696 Score = 116 bits (128), Expect = 9e-21 Identities = 133/176 (76%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || |||||||||||| | ||||| ||| ||| || || | ||| Sbjct 4140 AAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCGGATACTATTGAAAAT 4081 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| |||||||| |||||||| || || ||| ||| | | ||||| Sbjct 4080 GTAAAAGCTAAA-ATTCAAGATAAAGAAGGTATCCCTCCCGACCAGCAACGTTTGATCTT 4022 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 |||||||||||| ||||||||||| || ||| | |||||||||| |||| |||| Sbjct 4021 CGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAATATCCAAAAAG 3966 >seq28572 Length=14732 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || |||||||| ||| | ||||| ||| | ||||| ||||| || ||| Sbjct 1807 ACCGGTAAAACGATTACTCTCGAAGTCGAACCTAGCGACACCATCGAAAACGTCAAGGCT 1748 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||||||||| || || ||| | | || |||||||||||| Sbjct 1747 AAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTTTAATTTTCGCCGGAAAG 1688 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| || ||| | | |||||||| ||||||||||||| || || || Sbjct 1687 CAGCTTGAAGATGGTAGAACTCTTTCGGATTACAATATCCAGAAAGAGTCGACGCTGCAT 1628 Query 206374 CTTGTTTTGAGACTTCG 206390 | || ||| ||||||| Sbjct 1627 TTGGTGTTGCGACTTCG 1611 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | ||||| ||||| ||||| | ||||| || | ||||||| ||||| Sbjct 2045 CAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGTGACACAATCGAAAA 1986 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || || ||||| || || |||||| || ||| ||| | || || || Sbjct 1985 TGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAGCAACGTCTCATTTT 1926 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || | ||||| || || ||| | | ||||| || | || ||||| || Sbjct 1925 CGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAATATTCAAAAAGAATC 1866 Query 206364 TACTCTTCA 206372 |||||||| Sbjct 1865 GACTCTTCA 1857 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| ||| || | || || || ||||||||||||| ||| || || | | ||| Sbjct 1611 CGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTT 1670 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||| ||||||||||||||||| || | ||||| ||| Sbjct 1671 CTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGA 1715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180603588837506