Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq63578 150 4e-31
seq52934 116 9e-21
seq28572 113 1e-19
>seq63578
Length=26733
Score = 150 bits (166), Expect = 4e-31
Identities = 159/207 (77%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||||||||| |||||||| ||||| || ||||| ||| ||||||||| |||||
Sbjct 12261 AAAACGCTCACTGGAAAAACTATCACGTTAGAAGTCGAACCATCTGACACAATCGAAAAT 12202
Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
||||| |||||| || ||||| |||||||| || || ||| |||||| | || ||
Sbjct 12201 GTAAAAGCAAAA-ATCCAAGATAAAGAAGGTATCCCACCCGACCAGCAAAGATTAATTTT 12143
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||| || || || |||||||| | |||||| ||| |||||| | |||||||||||
Sbjct 12142 CGCCGGTAAACAATTAGAAGATGGTCGTACTTTGAGCGACTACAACATTCAGAAAGAGTC 12083
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
||| || || | |||||| | || ||
Sbjct 12082 TACGCTGCATTTAGTTTTGCGTCTACG 12056
Score = 129 bits (142), Expect = 1e-24
Identities = 161/217 (74%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 206178 ATTTTGCAAA--ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACA 206235
||||| |||| ||||| || |||||||| ||||| |||||||||||| ||||| ||
Sbjct 12498 ATTTTTCAAATTACGCTAACCGGAAAAACTATCACCTTGGAAGTGGAACCGTCTGATACT 12439
Query 206236 GTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAG 206294
| ||| || ||||| ||| |||||||| |||||||| || || ||| || ||
Sbjct 12438 ATTGAAAACGTGAAAGCCAAA-ATTCAAGACAAAGAAGGCATCCCACCCGACCAGCAGAG 12380
Query 206295 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 206354
| | || |||||||| || || |||||||| || | || ||| |||||| || ||||
Sbjct 12379 ATTAATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACCTTGAGCGATTATAATATCCA 12320
Query 206355 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
||||| || |||||||| | ||||| | ||||||
Sbjct 12319 AAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGA 12283
Score = 120 bits (132), Expect = 7e-22
Identities = 142/190 (75%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||||||||| |||||||| || || ||||| |||||| || || || | |||
Sbjct 11805 AAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCCGATACCATTGAAAAT 11746
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| ||| ||||| || |||||||| || || ||| ||| || | |||||
Sbjct 11745 GTCAAAGCTAAA-ATTCAGGATAAAGAAGGCATACCACCAGACCAGCAACGATTGATCTT 11687
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||||| || |||||||||||||| | ||| || ||||| ||| | |||||||| ||
Sbjct 11686 TGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAACATTCAGAAAGAATC 11627
Query 206364 TACTCTTCAC 206373
|||||||||
Sbjct 11626 CACTCTTCAC 11617
Score = 105 bits (116), Expect = 2e-17
Identities = 149/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || || || || || || |||||||| ||| || || || ||||
Sbjct 11577 AAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTCCGATACCATCGAGAAC 11518
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| ||| |||||||| |||||||| || ||| ||| || ||| | || ||
Sbjct 11517 GTGAAAGCTAAA-ATTCAAGATAAAGAAGGTATCCCGCCTGACCAGCAGAGATTGATTTT 11459
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| |||||||| ||||||||||| | || || |||||| || | ||||| |||||
Sbjct 11458 CGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGATTATAATATTCAGAAGGAGTC 11399
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||||| | |||||| | |||||
Sbjct 11398 CACCCTTCATTTGGTTTTGCGTCTTCG 11372
Score = 104 bits (114), Expect = 6e-17
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || |||||||| || ||||||||||| ||| || || || |||||
Sbjct 12717 AAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCATCCGATACGATCGAAAAC 12658
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||||||||| ||||||||||| || ||| ||| | | || ||
Sbjct 12657 GTCAAAGCCAA-GATTCAAGATAAAGAAGGAATCCCACCTGACCAGCAACGGTTAATTTT 12599
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||||| || || ||||||||||| | || ||| ||| ||||| | || ||||| ||
Sbjct 12598 TGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTACAATATTCAAAAAGAATC 12539
Query 206364 TACTCTTCA 206372
|| |||||
Sbjct 12538 GACGCTTCA 12530
Score = 100 bits (110), Expect = 7e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||||||||| || ||||| ||||| |||||||| || || || ||| ||||
Sbjct 12033 AAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAGAGCCATCCGATACAATCGAGAAT 11974
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||||||||| |||||||| ||| || ||| || || | || ||
Sbjct 11973 GTTAAAGCCAA-GATTCAAGACAAAGAAGGTATTCCACCCGACCAGCAGCGATTAATTTT 11915
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||| || || |||||||| || | || || ||||||||| |||| || || ||
Sbjct 11914 CGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATTACAATATCCAAAAGGAATC 11855
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || || | || || | |||||
Sbjct 11854 CACCCTACATTTGGTCTTACGTCTTCG 11828
>seq52934
Length=6696
Score = 116 bits (128), Expect = 9e-21
Identities = 133/176 (76%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || |||||||||||| | ||||| ||| ||| || || | |||
Sbjct 4140 AAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCGGATACTATTGAAAAT 4081
Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
||||| || ||| |||||||| |||||||| || || ||| ||| | | |||||
Sbjct 4080 GTAAAAGCTAAA-ATTCAAGATAAAGAAGGTATCCCTCCCGACCAGCAACGTTTGATCTT 4022
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359
|||||||||||| ||||||||||| || ||| | |||||||||| |||| ||||
Sbjct 4021 CGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAATATCCAAAAAG 3966
>seq28572
Length=14732
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || |||||||| ||| | ||||| ||| | ||||| ||||| || |||
Sbjct 1807 ACCGGTAAAACGATTACTCTCGAAGTCGAACCTAGCGACACCATCGAAAACGTCAAGGCT 1748
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| ||||||||||| || || ||| | | || ||||||||||||
Sbjct 1747 AAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTTTAATTTTCGCCGGAAAG 1688
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| | |||||||| || ||| | | |||||||| ||||||||||||| || || ||
Sbjct 1687 CAGCTTGAAGATGGTAGAACTCTTTCGGATTACAATATCCAGAAAGAGTCGACGCTGCAT 1628
Query 206374 CTTGTTTTGAGACTTCG 206390
| || ||| |||||||
Sbjct 1627 TTGGTGTTGCGACTTCG 1611
Score = 89.7 bits (98), Expect = 1e-12
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
|||||| | ||||| ||||| ||||| | ||||| || | ||||||| |||||
Sbjct 2045 CAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGTGACACAATCGAAAA 1986
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| || || ||||| || || |||||| || ||| ||| | || || ||
Sbjct 1985 TGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAGCAACGTCTCATTTT 1926
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||||||||| || | ||||| || || ||| | | ||||| || | || ||||| ||
Sbjct 1925 CGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAATATTCAAAAAGAATC 1866
Query 206364 TACTCTTCA 206372
||||||||
Sbjct 1865 GACTCTTCA 1857
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||| ||| || | || || || ||||||||||||| ||| || || | | |||
Sbjct 1611 CGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTT 1670
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|| |||||||| ||||||||||||||||| || | ||||| |||
Sbjct 1671 CTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGA 1715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180603588837506
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |