Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq63578 129 6e-25 seq28572 118 1e-21 seq52934 91.5 1e-13 >seq63578 Length=26733 Score = 129 bits (142), Expect = 6e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| |||||||| || || |||| ||||| |||||| | ||||||||||| | Sbjct 11627 GATTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCCAACTGTTTACCGGCA 11686 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || || || ||||| ||||||||||||||||| |||||| ||| | Sbjct 11687 AAGATCAATCGTTGCTGGTCTGGTGGTATGCCTTCTTTATCCTGAATTTTAGCTTTGACA 11746 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||||| ||| ||||| || | || | ||||| ||||| || ||||| Sbjct 11747 TTTTCAATGGTATCGGACGGTTCCACCTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTA 11806 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 11807 ACGAAAATTTGCAT 11820 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| ||||| | | |||||||| ||||||||||||||||||| ||||| | Sbjct 12062 CGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCA 12121 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | |||| | || || || || || || ||||||||| Sbjct 12122 TCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTA 12181 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | || || | || || ||||| | ||| | Sbjct 12182 TCTTGGATTTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACTTCTAACGTGATA 12241 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||| | |||||| ||||| Sbjct 12242 GTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 12276 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || ||||||||||| ||||||||||||| || || |||||| Sbjct 12524 ACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCTTCC 12583 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||||||| | | |||| || || || || || || || ||||||||||| | Sbjct 12584 AATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGA 12643 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | ||| | ||||||| || || ||||| | || | ||||| Sbjct 12644 ATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGTTTTT 12703 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||||| ||| || ||||| Sbjct 12704 CCGGTAAGAGTTTTTACGAAGATTTGCAT 12732 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| ||||| | | || |||||||| || || || ||||||| |||||| Sbjct 12290 CGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTCAAGGTACGACCG 12349 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | |||| | ||| || || || || ||||||||||| Sbjct 12350 TCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGGATGCCTTCTTTG 12409 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | ||| | |||||| | ||| |||||||| | || | Sbjct 12410 TCTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACTTCCAAGGTGATA 12469 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || || || ||||| ||||| Sbjct 12470 GTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCAT 12504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||||||||| | | | ||||| || ||||| || || ||||| | || || | Sbjct 11378 CGCAAAACCAAATGAAGGGTGGACTCCTTCTGAATATTATAATCGCTTAACGTGCGGCCA 11437 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || || | | || | | ||| || || || || || ||||||||| Sbjct 11438 TCTTCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGTCAGGCGGGATACCTTCTTTA 11497 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | || | ||||||| ||| || ||||| | || | Sbjct 11498 TCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGGACGGTTCGACTTCCAAGGTAATA 11557 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || | |||||| | |||||| ||||| Sbjct 11558 GTCTTGCCGGTTAAAGTTTTCACGAAAATTTGCAT 11592 >seq28572 Length=14732 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| | || |||||||| ||||| ||||| | || | |||||| Sbjct 2990 AACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTC 3049 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| |||||||||| | || ||||| || || || ||||| |||||||||||||| Sbjct 3050 GAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTG 3109 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| || | | ||| | || ||| | ||||| ||||||| || | ||||| Sbjct 3110 AATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTT 3169 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | ||||||| ||| |||||||| Sbjct 3170 GCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||||||||||| | || || ||||| || ||||| ||| | || || Sbjct 3209 CAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCG 3268 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||||| || || || | |||| ||||| |||||||| ||||| || ||||| Sbjct 3269 GCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTC 3328 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| |||||| || | | ||| | ||||| |||| || ||||||| || Sbjct 3329 CTTATCTTGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACTTCGAGGGT 3388 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||||||| ||||||| ||| |||||||| Sbjct 3389 GATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCAT 3427 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| | || |||||||| |||||||| ||| | || || ||||| Sbjct 2534 AACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTC 2593 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| |||||||||| | |||| ||| |||||||| || || || || || ||||| Sbjct 2594 GAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTG 2653 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| || | | ||| | || || | ||||| ||||||| || | ||||| Sbjct 2654 AATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTT 2713 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| | ||||| | |||||||||||| Sbjct 2714 ACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||||| |||| || |||||||| ||||| ||| | ||| || ||||||||| || Sbjct 2084 ATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCTTCGAGTTG 2143 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 ||| |||| | | |||| ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 2144 TTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGGATTTT 2203 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 || | | ||| | || || | ||||| ||||||| || | |||||||| || Sbjct 2204 AGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCCGT 2263 Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| | ||| || ||||| Sbjct 2264 TAGGGTTTTAACGAAGATTTGCAT 2287 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 || ||||| | | | || |||||||| ||||| ||||| | || | ||||||| Sbjct 2763 ACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCTTCG 2822 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| || | |||| ||||| |||||||| || || || || |||||||| Sbjct 2823 AGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCTTGT 2882 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||| ||| | ||||| ||||||| || | ||||||| Sbjct 2883 ATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTTTTA 2942 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| || ||||| Sbjct 2943 CCAGTCAAGGTCTTGACGAAGATTTGCAT 2971 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||| ||||| | | || |||||||| ||||| ||||| | || | Sbjct 2297 CAATCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCT 2356 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||||||| |||||||| | | |||| ||||| || ||||| || || || || || Sbjct 2357 TCCATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTC 2416 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| |||||| || | | ||| | || || | ||||| || |||| || Sbjct 2417 CTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGT 2476 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||||| | || || | |||||| ||||| Sbjct 2477 GATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 2515 >seq52934 Length=6696 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||| || ||||| ||| | || | |||||| | || || |||| ||| Sbjct 3966 CTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 4025 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | ||| || || || ||||| || ||||||||||| |||||| ||| | | || Sbjct 4026 TCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 4085 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||| | || || ||||||| || | ||||||||| || || ||||| | || Sbjct 4086 CAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGA 4145 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 4146 AGATCTGCAT 4155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476132289150960