Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq28572 149 6e-31 seq63578 131 1e-25 seq52934 123 2e-23 seq77090 82.4 7e-11 >seq28572 Length=14732 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| ||||| || ||| | ||||| |||||||||| | | Sbjct 2059 ATGCAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGT 2000 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||||| ||||| ||||| || || || || ||| Sbjct 1999 GACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAG 1940 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||| |||||||||||||| | |||| | || ||||| ||| Sbjct 1939 CAACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAAT 1880 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || |||||||||| | |||||||||| || Sbjct 1879 ATTCAAAAAGAATCGACTCTTCATTTAGTCCTCCGATTGAGAGGCGG 1833 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || ||| |||| || ||||||| || | | | Sbjct 2971 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAAACGATTACACTCGAAGTTGAGCCTAGC 2912 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 2911 GACACTATTGAAAACGTCAAGGCCAAAATACAAGATAAAGAGGGAATTCCACCCGATCAA 2852 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || ||||||||||||||||||| |||| | || || || || Sbjct 2851 CAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGAAGAACTCTCTCTGACTATAAC 2792 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| ||| |||||||||| | |||||||||| || Sbjct 2791 ATCCAAAAAGAATCGACCCTTCATTTAGTCCTTCGATTGAGAGGTGG 2745 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || |||||||| |||||||| ||| | ||||| |||||||||| | | | Sbjct 3199 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGC 3140 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||||||| |||||||| || || || || || ||| Sbjct 3139 GACACGATTGAAAACGTCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCAG 3080 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| || ||| |||||||||||||||| ||||| | || || || Sbjct 3079 CAACGTCTGATTTTCGCCGGTAAACAACTCGAAGATGGTAGAACACTTTCGGACTATAAC 3020 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||||||||| || | ||||| || | | | |||||||||| Sbjct 3019 ATCCAAAAAGAATCTACTTTACATTTGGTTCTCCGTCTCAGAGGAGGAA 2971 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| |||| || ||| | ||||| ||||||| || ||| Sbjct 2287 ATGCAAATCTTCGTTAAAACCCTAACGGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2228 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||||| ||||| || || || || || ||||| Sbjct 2227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCCCCAGATCAA 2168 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | |||||||||||||||||||| ||| || |||||||||| Sbjct 2167 CAACGTTTAATTTTTGCCGGCAAACAACTCGAAGATGGCCGAACCCTCTCCGATTACAAT 2108 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| || | ||| | ||| | ||||||||||||| Sbjct 2107 ATTCAAAAGGAATCAACTTTACATCTCGTGCTTCGATTGAGAGGAGG 2061 Score = 114 bits (126), Expect = 1e-20 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 |||| | || | || ||||| | || |||||||| || || || ||| | ||||| | Sbjct 3443 TTTTGATTTCAGAAAAATGCAGATCTTCGTAAAAACGTTGACTGGTAAAACCATCACCCT 3384 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 |||||| ||| | | ||||| ||||| | || || |||||| ||||| || || Sbjct 3383 CGAAGTTGAACCGAGTGATACGATCGAAAACGTCAAGGCGAAAATTCAAGATAAGGAAGG 3324 Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA 25338 ||| || || ||||| ||| | || || | || || || ||||||||||| | ||| Sbjct 3323 TATTCCTCCTGATCAACAACGTCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGAAC 3264 Query 25339 TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGG 25398 | |||||||||||| ||||| ||||| || | ||||| || | |||||||||| Sbjct 3263 GCTTTCCGATTACAATATCCAAAAGGAATCGACTTTACATTTGGTTCTTCGATTGAGAGG 3204 Query 25399 AGG 25401 || Sbjct 3203 TGG 3201 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || ||||| ||| |||| || ||||||||||| | | | Sbjct 1831 ATGCAAATCTTCGTTAAGACCTTGACCGGTAAAACGATTACTCTCGAAGTCGAACCTAGC 1772 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || || ||||| || || || ||||||||| Sbjct 1771 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAG 1712 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || ||| || || || ||||||| ||||| | | ||||||||| Sbjct 1711 CAACGTTTAATTTTCGCCGGAAAGCAGCTTGAAGATGGTAGAACTCTTTCGGATTACAAT 1652 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || ||||| || || | ||||| ||||| Sbjct 1651 ATCCAGAAAGAGTCGACGCTGCATTTGGTGTT 1620 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || ||||| || ||| | ||||| |||| ||||| | | Sbjct 2515 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATCACACTCGAGGTCGAGCCTAGT 2456 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || |||||| ||||| ||||| || || || |||||| Sbjct 2455 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCCCCTGATCAG 2396 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | | || |||||||||||||||| |||| | | || || || Sbjct 2395 CAACGTCTTATCTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCGGACTATAAC 2336 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || | |||||||| | |||||||||| || Sbjct 2335 ATCCAAAAAGAATCGACATTGCATTTAGTTCTCCGATTGAGAGGTGG 2289 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||| || ||| | ||||| ||||||| || ||| Sbjct 2743 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2684 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || |||||| ||||| ||||| || || || ||||| Sbjct 2683 GACACCATCGAAAATGTCAAGGCTAAAATTCAGGATAAGGAGGGAATTCCCCCTGATCAA 2624 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || ||| |||||||||||||| | ||| | | ||||||||| Sbjct 2623 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGATTACAAC 2564 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||||||||| || | ||||| || Sbjct 2563 ATCCAAAAAGAATCGACATTACATTTGGT 2535 >seq63578 Length=26733 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || |||||||| | ||||| ||| | |||||| | ||||| || |||| | Sbjct 12048 ATGCAAATTTTCGTAAAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAGA-GCCATC 11990 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| |||||| | || ||| || ||| || ||||| ||||| || ||||| || Sbjct 11989 CGATACAATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCCGACCA 11930 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | |||| || ||| |||||| | ||||| | | | | ||||||||||| Sbjct 11929 GCAGCGATTAATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATTACAA 11870 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||| ||||| ||||||||| | ||||| || ||| Sbjct 11869 TATCCAAAAGGAATCCACCCTACATTTGGTCTTA 11836 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||| || || ||||||||||| | ||||| | ||||| ||| | Sbjct 12504 ATGCAAATTTTTCAAATTACGCTAACCGGAAAAACTATCACCTTGGAAGTGGAACCGTCT 12445 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| || ||||| || || || ||||| ||| Sbjct 12444 GATACTATTGAAAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATCCCACCCGACCAG 12385 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| || ||| |||||| | ||||| | | | | | |||||||| ||| Sbjct 12384 CAGAGATTAATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACCTTGAGCGATTATAAT 12325 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || |||||||||||||| |||||||||| ||| | | |||| |||| Sbjct 12324 ATCCAAAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGAGGTGGAA 12276 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || |||||||| | ||||||||| | || || | ||||| ||| | Sbjct 12736 CAAGATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACC 12677 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||| ||||| | || ||| || ||| |||||||| || || || || || Sbjct 12676 ATCCGATACGATCGAAAACGTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGA 12617 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||| | | |||| | ||| |||||| | ||||||| | | | ||||| || Sbjct 12616 CCAGCAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTA 12557 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||||||| || ||||||| || Sbjct 12556 CAATATTCAAAAAGAATCGACGCTTCATTTGGT 12524 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || |||||| | || || | || || ||| | | Sbjct 11820 ATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCC 11761 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| |||||||| || ||||| || || ||| Sbjct 11760 GATACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAG 11701 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | || | | ||| ||||| | ||||||| | | | | || ||||| || Sbjct 11700 CAACGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAAC 11641 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| ||||||||||| |||| || || | ||||| | || |||| Sbjct 11640 ATTCAGAAAGAATCCACTCTTCACTTGGTACTCAGATTACGTGGTGGAA 11592 >seq52934 Length=6696 Score = 123 bits (136), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| |||| || ||| ||||||| ||||||||||| | Sbjct 4155 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCG 4096 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | |||||| |||||| |||||||| ||||| || ||||| ||| Sbjct 4095 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAG 4036 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||| || ||| | ||||||| ||||| | | |||||||||| Sbjct 4035 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAAT 3976 Query 25355 ATTCAAAAAG--AATCC 25369 || ||||||| ||||| Sbjct 3975 ATCCAAAAAGGTAATCC 3959 >seq77090 Length=20911 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25277 GGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 25336 || || || || ||||| ||| | | |||| || || || ||||| ||||||| || Sbjct 10508 GGCATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGA 10567 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | | | |||||||| || ||||||||||| || | |||||||||||| |||||||| Sbjct 10568 ACTCTTTCTGATTACAACATCCAAAAAGAATCGACGTTACATTTAGTGTTACGATTGAGA 10627 Query 25397 GGAGG 25401 || || Sbjct 10628 GGTGG 10632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444647158019520