Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq28572 107 2e-18 seq63578 96.9 3e-15 >seq28572 Length=14732 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||||||||| || |||||||| || |||||||||| | ||||| |||| || Sbjct 3219 ACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCCGTCTTCG 3278 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || || || |||| || || || || | ||||| | ||||| | | || Sbjct 3279 AGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTTAT-CTTG 3337 Query 35648 ATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| | ||| | || | | ||| || |||| ||| || || | ||||| ||||| Sbjct 3338 AATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACTTCGAGGGTGATGGTTTT 3397 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||| ||||| ||||| || || ||||||||| Sbjct 3398 ACCAGTCAACGTTTTTACGAAGATCTGCATT 3428 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 35500 CTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTT 35559 || || ||| |||||||| | | |||||||||||| | ||| ||| || || || || Sbjct 1595 CTATTAATTGCCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATT 1654 Query 35560 GTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTG 35619 |||||| | | |||| | || || |||||||| || || || || || || ||||| Sbjct 1655 GTAATCCGAAAGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTG 1714 Query 35620 GTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCT 35679 || | ||| | | || ||||| |||||| ||| | || | | |||||||| Sbjct 1715 ATCGGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCT 1774 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||| || || | || ||||||||||| ||||| || || || || || ||||| Sbjct 1775 AGGTTCGACTTCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||||||||| || || ||||| ||||||||||||| | ||||| |||| || Sbjct 2535 ACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCG 2594 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || || ||||| || || || || || || || || | |||| | |||||| ||| || Sbjct 2595 AGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCC-TG 2653 Query 35648 ATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| | ||| | | || | | ||||| || | || || || | ||||| ||||| Sbjct 2654 AATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTT 2713 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || ||||| || || |||||||| Sbjct 2714 ACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||||||||| ||| || ||||| ||||| || || | | |||| | || || Sbjct 2991 ACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCG 3050 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || || ||||| || || |||| || |||||||||| ||| | || || || ||| || Sbjct 3051 AGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCC-TG 3109 Query 35648 ATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||||| ||| | || | | ||||||||| | || || || | ||||| ||||| Sbjct 3110 AATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTT 3169 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || ||||| || || |||||||| Sbjct 3170 GCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| | |||||| || ||||||||||| |||||||||| | |||||| | || || Sbjct 2078 CACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCTTC 2137 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || || || || ||||| || || || || || || | |||| | ||||| || Sbjct 2138 GAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTG 2197 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||| || ||| | || | | ||||| || | || || || | ||||| ||||| Sbjct 2198 GATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTT 2257 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || || ||||| Sbjct 2258 ACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 >seq63578 Length=26733 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||||||||| || | ||||| || | || || || |||||||| ||||| Sbjct 11592 TTCCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCAC 11651 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || | || |||| ||| ||||| ||||| ||||| || |||||||| | | Sbjct 11652 TCAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTG 11711 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | || || || ||| ||| ||| || || | | || | | || ||| || |||| Sbjct 11712 GTATGCCTTCTTTATCC-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCC 11770 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || || ||||| || || | ||||| || || || ||||| Sbjct 11771 ACCTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | ||| || ||||| | |||| ||| || ||||||||||| ||| | Sbjct 12050 CCACCACGTAGACGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTC 12109 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || | || ||||| || || || || | |||||||| | || Sbjct 12110 AAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGG 12169 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || || || ||| |||||| || | | || | | ||||| | ||| || Sbjct 12170 ATACCTTCTTTATCTTGGAT-TTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCGAC 12228 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || | |||||| ||||| || || | ||||| || || || ||||||| Sbjct 12229 TTCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCATTC 12278 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 || ||| ||||| | | ||| |||||||| | || |||||| ||||| || ||||| Sbjct 11362 ATGTCCGCCACGAAGACGCAAAACCAAATGAAGGGTGGACTCCTTCTGAATATTATAATC 11421 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | || || || | || |||| ||||| || || || ||||| | ||||||||| | Sbjct 11422 GCTTAACGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGTCAGG 11481 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATT 35684 || | | || || || ||| ||| |||| ||| | | || ||| || || Sbjct 11482 CGGGATACCTTCTTTATCT-TGAATTTTAGCTTTCACGTTCTCGATGGTATCGGACGGTT 11540 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || |||| || || || || || || ||||||||||| || || ||||||| Sbjct 11541 CGACTTCCAAGGTAATAGTCTTGCCGGTTAAAGTTTTCACGAAAATTTGCATTC 11594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450340631320880