Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 178 2e-39
seq19381 147 3e-30
seq13914 145 1e-29
seq59517 132 7e-26
>seq7792
Length=27931
Score = 178 bits (196), Expect = 2e-39
Identities = 165/209 (79%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712
|||||||||||| || || | |||||||||||| || |||||||| |||||||||||
Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248
Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772
||||||||| ||| ||||||||||||||||| || || ||||| || | | || |||
Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308
Query 39773 CCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACA 39829
|| || | | || |||| |||||| ||| ||||| || ||||||||||| |||
Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACA 19368
Query 39830 CAAGGCATTGTTTCTATAGCATTAAAGAG 39858
|||||||||||||| |||||||| || ||
Sbjct 19369 CAAGGCATTGTTTCAATAGCATTGAACAG 19397
Score = 127 bits (140), Expect = 3e-24
Identities = 163/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
||| || || ||||| ||||| || | ||| |||||||||||||| | || || || |
Sbjct 19485 ATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGT 19544
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996
|||||||||||||| || |||| ||||| | ||||| || ||| | | || | ||
Sbjct 19545 GATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTC 19604
Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056
| |||||||||||||| || || ||| ||||| |||||||| | || || |||
Sbjct 19605 GACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAAT 19664
Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101
|| | || || |||||| ||| ||| | |||||| ||| |||
Sbjct 19665 GAACTTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709
Score = 100 bits (110), Expect = 4e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
||||||||| || |||||||| ||||| || ||||| | ||| | ||||||||| || |
Sbjct 18911 CAATCTATCAGCTACAAATTCAATGTAAGTCTTCATTAATTCGCTATTCATTCCAATCAT 18970
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
|| |||| |||||| || | ||| |||| |||||| | || || || || ||
Sbjct 18971 CGATACGGGTAAAGCCTCTGTCAAAAATTCTTGTTCGATTGCAACAGCGTCACGAATAAT 19030
Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624
|| | | | ||| |||| ||| || | |||||||| |||||||||||||| ||
Sbjct 19031 TTCGGTAATTTCTTCAACACTTGGTTTTTGAATCAAATGTTTGAACATTAAGCAGGCAAA 19090
Query 39625 GTCACAATGTAGGCCCTCAT 39644
|| ||||| |||| ||
Sbjct 19091 ATCGGTATGTAAACCCTGAT 19110
Score = 86.0 bits (94), Expect = 9e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 40113 CTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCAC 40172
|||||||||||||||||||||| || || ||||||||||| ||||| ||| ||||||
Sbjct 19789 CTACTTCTTCAGCTGTCCAAAATGAAGCTTCTGCCTTTTTAAACATGGCCCAAATATCAT 19848
Query 40173 GATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209
|||| ||||| | || ||||||||| |||||
Sbjct 19849 CGTATTTAATTGGCATTATTACAAATCTACGAGGATT 19885
>seq19381
Length=19756
Score = 147 bits (162), Expect = 3e-30
Identities = 228/326 (70%), Gaps = 0/326 (0%)
Strand=Plus/Minus
Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576
|||||||| || || || ||| |||||| ||||||| | | ||||||||||| |
Sbjct 9237 TCGAATTCTTCACCGTAACAGTCAAACAATCCGGGACATTGACTGGGACACATCAAACTC 9178
Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636
|| ||||| | | || | | |||| ||| ||||| ||||| | || |||
Sbjct 9177 CATTTTTCATCTTTTTCGACCCTTCTCATGAATTCGTCGGGGATCCACATTGCGTAAAAT 9118
Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696
| ||| || | | | ||||| || || | ||||||| || || | ||| || | |
Sbjct 9117 AAATCCCTAGCGCGAGACTCTTCTTTACCAGAATTTTTTCGCAGCTCTAAAAATTCAAAA 9058
Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756
||||| | |||||| ||||| | || || || | | ||||||| ||| || |||||
Sbjct 9057 ATATCCGCATGCCAAGGTTCCAAGTAAATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCT 8998
Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816
|| || | ||||||||| |||||||| || || | ||||||||||| | |||||| |||
Sbjct 8997 TGGTCCACGTATCTGGCTGTGTTATTGTATACGCGAAGCATCGGAATTAGACCATTTGAT 8938
Query 69817 TTACCATTTGTTCCAGAAATATAACT 69842
|| |||||||||| ||||| ||
Sbjct 8937 ACGCCGTTTGTTCCAGCGATATAGCT 8912
Score = 113 bits (124), Expect = 6e-20
Identities = 140/187 (75%), Gaps = 6/187 (3%)
Strand=Plus/Minus
Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAG--AAAGCAGATTGTA 70052
||||||| ||||| |||||||| || ||||| || || |||||| | | | ||| ||
Sbjct 8694 CCGCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATA 8637
Query 70053 TGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACA 70111
||||||||| | || || ||||| | | | ||||| || | || || ||||||||||
Sbjct 8636 GGTTTCAATAACAGAGTCGATATCTTCGCCG-TGAATACCAACGGCAACTCGCATCAACA 8578
Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171
| ||||| || ||||| || | ||| || |||||||| || || |||||||||||||
Sbjct 8577 TGTGCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAG 8518
Query 70172 TTTTAAA 70178
| | |||
Sbjct 8517 TCTGAAA 8511
>seq13914
Length=11729
Score = 145 bits (160), Expect = 1e-29
Identities = 158/209 (76%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712
|||||||| || || || |||||||||||||| || | ||||| |||||||||||
Sbjct 7900 ATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTTTAAGCCAAAATATC 7959
Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772
||||||||| |||||||||||| || ||||| || || ||||| || | | ||| |||
Sbjct 7960 GCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAGCTATGATTCTTTCT 8019
Query 39773 CCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACA 39829
|| || | | | | | || |||||||||| ||||| |||||||| |||| |||
Sbjct 8020 CCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAGCTTTTCTCTTAACA 8079
Query 39830 CAAGGCATTGTTTCTATAGCATTAAAGAG 39858
|| ||||| ||||| || ||||| || ||
Sbjct 8080 CACGGCATGGTTTCAATGGCATTGAATAG 8108
Score = 140 bits (154), Expect = 4e-28
Identities = 166/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||||| || || || || |||| || |||||||||||||| | || ||||| |
Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996
|| ||||||||||||||| |||| ||||||| ||||||||| ||| |||| | ||
Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317
Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056
| ||||||||||| || || |||||| || || |||||||| || || || |||
Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAAT 8377
Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101
|| | || || |||||| ||| ||| | ||| || ||| |||
Sbjct 8378 GAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422
>seq59517
Length=19559
Score = 132 bits (146), Expect = 7e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| ||||| || |||| | ||| || || || ||||| ||||| | ||||
Sbjct 14726 TGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGAT 14667
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||| | |||||||||||| || || || |||||||| || | | || | |
Sbjct 14666 TCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAA 14607
Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTA--GATGTTTCCAATCCCAAAGATCAG 68896
||||||| || | | | | ||||| ||||||| |||| |||||||||| | |||||
Sbjct 14606 TTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATG--TCCAATCCCATAAATCAG 14549
Query 68897 ATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930
|||| || ||||| | |||||| || | |||
Sbjct 14548 ATGGCTGGACGTTCCACATATCGTACTGCAAAAT 14515
Score = 107 bits (118), Expect = 3e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068
||||| || ||||||||||| || | || || | || || || |||||||| ||||
Sbjct 13007 GTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTTTCAATCGCTGCG 12948
Query 70069 TCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128
|| ||||| ||||||||||| || || |||||||||||||| || || ||||||
Sbjct 12947 TCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGTTGTGGGCGTTCT 12888
Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172
|| ||| ||||||||||| | || |||||||||| |||
Sbjct 12887 ACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/173 (72%), Gaps = 2/173 (1%)
Strand=Plus/Minus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
||||||| |||||||| ||||| || || ||||| || | || || | || |||| |
Sbjct 12541 CACTAAAAAGTTTTTTAGTTTCTTTATGCAAATTGGAAACAGCAATACGAGCGGCTAACA 12482
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCT 70452
||| |||||||||||| | ||||| || | | || || |||| || | | ||||
Sbjct 12481 CAGCGTAGTCAGGATGTCGAGTAGT-CATGGAGGCAGCAGTTTCGGCGGAGAGATTATCC 12423
Query 70453 AATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 70505
||||| || |||||||| ||| | | | ||| | || || |||||||| ||
Sbjct 12422 AATTCCATCGTTGTAACGCCGGGAAACAAACCTCGGATTACCTTCATGGCAAT 12370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686218576865040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |