Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7792 178 2e-39 seq19381 147 3e-30 seq13914 145 1e-29 seq59517 132 7e-26 >seq7792 Length=27931 Score = 178 bits (196), Expect = 2e-39 Identities = 165/209 (79%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 |||||||||||| || || | |||||||||||| || |||||||| ||||||||||| Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772 ||||||||| ||| ||||||||||||||||| || || ||||| || | | || ||| Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308 Query 39773 CCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACA 39829 || || | | || |||| |||||| ||| ||||| || ||||||||||| ||| Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACA 19368 Query 39830 CAAGGCATTGTTTCTATAGCATTAAAGAG 39858 |||||||||||||| |||||||| || || Sbjct 19369 CAAGGCATTGTTTCAATAGCATTGAACAG 19397 Score = 127 bits (140), Expect = 3e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| || || ||||| ||||| || | ||| |||||||||||||| | || || || | Sbjct 19485 ATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGT 19544 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 |||||||||||||| || |||| ||||| | ||||| || ||| | | || | || Sbjct 19545 GATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTC 19604 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | |||||||||||||| || || ||| ||||| |||||||| | || || ||| Sbjct 19605 GACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAAT 19664 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 || | || || |||||| ||| ||| | |||||| ||| ||| Sbjct 19665 GAACTTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||||||||| || |||||||| ||||| || ||||| | ||| | ||||||||| || | Sbjct 18911 CAATCTATCAGCTACAAATTCAATGTAAGTCTTCATTAATTCGCTATTCATTCCAATCAT 18970 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || |||| |||||| || | ||| |||| |||||| | || || || || || Sbjct 18971 CGATACGGGTAAAGCCTCTGTCAAAAATTCTTGTTCGATTGCAACAGCGTCACGAATAAT 19030 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 || | | | ||| |||| ||| || | |||||||| |||||||||||||| || Sbjct 19031 TTCGGTAATTTCTTCAACACTTGGTTTTTGAATCAAATGTTTGAACATTAAGCAGGCAAA 19090 Query 39625 GTCACAATGTAGGCCCTCAT 39644 || ||||| |||| || Sbjct 19091 ATCGGTATGTAAACCCTGAT 19110 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 40113 CTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCAC 40172 |||||||||||||||||||||| || || ||||||||||| ||||| ||| |||||| Sbjct 19789 CTACTTCTTCAGCTGTCCAAAATGAAGCTTCTGCCTTTTTAAACATGGCCCAAATATCAT 19848 Query 40173 GATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 |||| ||||| | || ||||||||| ||||| Sbjct 19849 CGTATTTAATTGGCATTATTACAAATCTACGAGGATT 19885 >seq19381 Length=19756 Score = 147 bits (162), Expect = 3e-30 Identities = 228/326 (70%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 |||||||| || || || ||| |||||| ||||||| | | ||||||||||| | Sbjct 9237 TCGAATTCTTCACCGTAACAGTCAAACAATCCGGGACATTGACTGGGACACATCAAACTC 9178 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || ||||| | | || | | |||| ||| ||||| ||||| | || ||| Sbjct 9177 CATTTTTCATCTTTTTCGACCCTTCTCATGAATTCGTCGGGGATCCACATTGCGTAAAAT 9118 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | ||| || | | | ||||| || || | ||||||| || || | ||| || | | Sbjct 9117 AAATCCCTAGCGCGAGACTCTTCTTTACCAGAATTTTTTCGCAGCTCTAAAAATTCAAAA 9058 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 ||||| | |||||| ||||| | || || || | | ||||||| ||| || ||||| Sbjct 9057 ATATCCGCATGCCAAGGTTCCAAGTAAATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCT 8998 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | ||||||||| |||||||| || || | ||||||||||| | |||||| ||| Sbjct 8997 TGGTCCACGTATCTGGCTGTGTTATTGTATACGCGAAGCATCGGAATTAGACCATTTGAT 8938 Query 69817 TTACCATTTGTTCCAGAAATATAACT 69842 || |||||||||| ||||| || Sbjct 8937 ACGCCGTTTGTTCCAGCGATATAGCT 8912 Score = 113 bits (124), Expect = 6e-20 Identities = 140/187 (75%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAG--AAAGCAGATTGTA 70052 ||||||| ||||| |||||||| || ||||| || || |||||| | | | ||| || Sbjct 8694 CCGCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATA 8637 Query 70053 TGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACA 70111 ||||||||| | || || ||||| | | | ||||| || | || || |||||||||| Sbjct 8636 GGTTTCAATAACAGAGTCGATATCTTCGCCG-TGAATACCAACGGCAACTCGCATCAACA 8578 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 | ||||| || ||||| || | ||| || |||||||| || || ||||||||||||| Sbjct 8577 TGTGCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAG 8518 Query 70172 TTTTAAA 70178 | | ||| Sbjct 8517 TCTGAAA 8511 >seq13914 Length=11729 Score = 145 bits (160), Expect = 1e-29 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 |||||||| || || || |||||||||||||| || | ||||| ||||||||||| Sbjct 7900 ATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTTTAAGCCAAAATATC 7959 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772 ||||||||| |||||||||||| || ||||| || || ||||| || | | ||| ||| Sbjct 7960 GCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAGCTATGATTCTTTCT 8019 Query 39773 CCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACA 39829 || || | | | | | || |||||||||| ||||| |||||||| |||| ||| Sbjct 8020 CCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAGCTTTTCTCTTAACA 8079 Query 39830 CAAGGCATTGTTTCTATAGCATTAAAGAG 39858 || ||||| ||||| || ||||| || || Sbjct 8080 CACGGCATGGTTTCAATGGCATTGAATAG 8108 Score = 140 bits (154), Expect = 4e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || |||| || |||||||||||||| | || ||||| | Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || ||||||||||||||| |||| ||||||| ||||||||| ||| |||| | || Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | ||||||||||| || || |||||| || || |||||||| || || || ||| Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAAT 8377 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 || | || || |||||| ||| ||| | ||| || ||| ||| Sbjct 8378 GAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422 >seq59517 Length=19559 Score = 132 bits (146), Expect = 7e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| ||||| || |||| | ||| || || || ||||| ||||| | |||| Sbjct 14726 TGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGAT 14667 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||| | |||||||||||| || || || |||||||| || | | || | | Sbjct 14666 TCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAA 14607 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTA--GATGTTTCCAATCCCAAAGATCAG 68896 ||||||| || | | | | ||||| ||||||| |||| |||||||||| | ||||| Sbjct 14606 TTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATG--TCCAATCCCATAAATCAG 14549 Query 68897 ATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 |||| || ||||| | |||||| || | ||| Sbjct 14548 ATGGCTGGACGTTCCACATATCGTACTGCAAAAT 14515 Score = 107 bits (118), Expect = 3e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 ||||| || ||||||||||| || | || || | || || || |||||||| |||| Sbjct 13007 GTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTTTCAATCGCTGCG 12948 Query 70069 TCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || ||||| ||||||||||| || || |||||||||||||| || || |||||| Sbjct 12947 TCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGTTGTGGGCGTTCT 12888 Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 || ||| ||||||||||| | || |||||||||| ||| Sbjct 12887 ACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 ||||||| |||||||| ||||| || || ||||| || | || || | || |||| | Sbjct 12541 CACTAAAAAGTTTTTTAGTTTCTTTATGCAAATTGGAAACAGCAATACGAGCGGCTAACA 12482 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCT 70452 ||| |||||||||||| | ||||| || | | || || |||| || | | |||| Sbjct 12481 CAGCGTAGTCAGGATGTCGAGTAGT-CATGGAGGCAGCAGTTTCGGCGGAGAGATTATCC 12423 Query 70453 AATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 70505 ||||| || |||||||| ||| | | | ||| | || || |||||||| || Sbjct 12422 AATTCCATCGTTGTAACGCCGGGAAACAAACCTCGGATTACCTTCATGGCAAT 12370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686218576865040