Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq9614 304 3e-78 seq19165 244 3e-60 >seq9614 Length=652 Score = 304 bits (336), Expect = 3e-78 Identities = 179/186 (96%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 34954 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 35013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 35014 ATAACCGCCATCGCTGGACTGTCGAAGAGTGCAGGGCCATCAAGGCGGAGTATCAGCAGA 35073 |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| || |||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 35074 AACTCAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 35133 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 35134 TCCAGA 35139 |||||| Sbjct 472 TCCAGA 467 >seq19165 Length=1007 Score = 244 bits (270), Expect = 3e-60 Identities = 158/173 (91%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 23002 TAAGTTCGATCTCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAACAGCCAGGCGTC 23061 ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 TAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTC 122 Query 23062 TTCGCTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATACAGTCTGGTAGT 23121 |||| ||||||||||||||||||||||||||||||||||| || |||| || ||||| || Sbjct 121 TTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGT 62 Query 23122 TCAGACGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCGATTTCTGAT 23174 |||| || ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 61 TCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGAT 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122606050427532