Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 134 1e-26
seq13914 105 5e-18
seq53791 95.1 1e-14
seq54470 82.4 6e-11
>seq7792
Length=27931
Score = 134 bits (148), Expect = 1e-26
Identities = 158/211 (75%), Gaps = 7/211 (3%)
Strand=Plus/Minus
Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099
|||| ||||| || |||||| | ||| |||| | |||||||||||||| | ||||
Sbjct 19396 TGTTCAATGCTATTGAAACAATGCCTTGTGTTAAGAAGAAAGCAGACTGGGCGTTGAAAT 19337
Query 44100 GGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156
||||| || ||||| | ||||||||||| | | | |||||||| | || ||||
Sbjct 19336 GGATAGCTGATAAAAATGCTACTTTTGGAGAAAGGATCATAGCGTTTGCTGCCGTCGAAG 19277
Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216
|||| |||||||||||| ||||| || ||||||||| | || || ||||| | ||||
Sbjct 19276 GCATCTTCTTTTCAGGAAGTTTTGCTGCAATATTTTGGCTTAAAAAGCGAGGCCTAATGC 19217
Query 44217 CTGGGTTGACGTTTTCA--AATGAGTTAATA 44245
|||| ||||| ||||| || || ||||||
Sbjct 19216 CTGGATTGAC--TTTCAGTAACGAATTAATA 19188
Score = 105 bits (116), Expect = 5e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909
||| | || ||||| || || ||||| || || ||||||||||| || || ||
Sbjct 19655 GTTCTTGCATTTTTCGCCGCATCTGACGGTATCGTGAATGAAAATTTAGTCGAGCGCTTC 19596
Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969
|||||||||||| | || ||||| ||| || || || ||||| || |||||||
Sbjct 19595 TTTCAAGAAGTTCAAATCCCCGAAGCTAGATTCTTCTACGGATTTCAGATCACCATAGAG 19536
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||||| |||||||||||| | ||||||| || ||| |||| |||
Sbjct 19535 AATGTTCATTCAGAAATGTACAGTTTATTGATAGACACATACGTCAAGGAT 19485
>seq13914
Length=11729
Score = 105 bits (116), Expect = 5e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909
||||| || ||||| ||||| || || || || ||||||||||| || || |||
Sbjct 8368 GTTTTAGCATTTTTCGCTGCCTCTGATGGTATCGTTAATGAAAATTTAGTCGAGCGTTTT 8309
Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969
|||||||| ||| | || ||||| ||| |||||| || |||||||| | || ||
Sbjct 8308 TTCCAAGAAGTACAAATTCCTGAAGCCAGATTTTTTTACGGATTTCAAATCACAATTGAG 8249
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| | ||||| ||||||||||| | |||| || || ||||| ||||||
Sbjct 8248 AATGTACATTCAGAAATGTACAGCTTGTTGATTGACACTTACATTAAAGAT 8198
Score = 104 bits (114), Expect = 2e-17
Identities = 152/210 (72%), Gaps = 9/210 (4%)
Strand=Plus/Minus
Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100
|| ||||| || ||||| | || || | | | | | ||||| |||||||| | || ||
Sbjct 8105 TTCAATGCCATTGAAACCATGCCGTGTGTTAAGAGA-AAAGCTGACTGGGCGTTGAAGTG 8047
Query 44101 GATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157
||||||| ||| | ||||||||||| || | | || ||||| | ||| |||||
Sbjct 8046 GATAAATGACAAAAACGCGACTTTTGGAGAAAGAATCATAGCTTTTGCTGCTGTCGAAGG 7987
Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217
||||||||||| ||| ||||| || ||||||||| | || ||| | || | |||||
Sbjct 7986 TATTTTCTTTTCTGGAAGTTTTGCTGCGATATTTTGGCTTAAAAAAAGGGGCCTAATGCC 7927
Query 44218 TGGGTTGACGTTTTCA--AATGAGTTAATA 44245
||| |||| ||||| ||||| ||||||
Sbjct 7926 TGGACTGAC--TTTCAGCAATGAATTAATA 7899
>seq53791
Length=16609
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/197 (71%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG---GT 19605
||||| ||||| ||| | |||||| | || || |||||||| |||||| |||| ||
Sbjct 5811 TTGCATATTATTATATTCGATGAAATTGATGCCATCTGTAAAGCAAGAGGCTCTGTTGGT 5752
Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| |||| || || || ||||| ||||| |||||| | || | ||| | || || ||
Sbjct 5751 GGAAATACGGGTGTTCACGACACAGTTGTTAATCAATTATTGGCCAAAATTGATGGCGTA 5692
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| ||||| || |||||| | || ||||| ||||| ||||| || | || |||
Sbjct 5691 GAACAACTCAACAATATTCTGGTCATTGGTATGACAAATAGGAAAGATATGATTGACGAA 5632
Query 19723 GCCTTATTACGACCCGG 19739
|| | |||||||||||
Sbjct 5631 GCTCTTTTACGACCCGG 5615
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 19319 TTAAACAATTG--GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTG 19376
||||| | ||| |||||||| || || || | ||| | || || || ||||||
Sbjct 6130 TTAAAAACTTGTAGGATGTAAGCACGTAAAGGGTATATTGTTGTACGGACCTCCGGGTAC 6071
Query 19377 TGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAAT 19436
||| |||||||| || || | || || | ||| | | | | | || |||||
Sbjct 6070 TGGTAAAACATTGATGGCTCGTCAAATTGGCAAAATGTTGAATGCTCGAGAACCAAAAAT 6011
Query 19437 TGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACG 19496
|||||| |||||| |||| || | || ||||| || |||| |||| || | || ||
Sbjct 6010 TGTAAACGGTCCTCAAATATTGGACAAGTATGTTGGAGAATCTGAAGCCAACATTCGTCG 5951
Query 19497 TTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527
|||||||||||||||||||||||| |||||
Sbjct 5950 ATTGTTTGCTGACGCTGAAGAAGAAGAAAAA 5920
>seq54470
Length=54847
Score = 82.4 bits (90), Expect = 6e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 40689 CAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTA 40748
||||||||| | || || || ||| | | ||||||||||| | | ||||| || ||
Sbjct 48948 CAGTTTCCGCTACTGACCACGAAACGAGTATTTTGGAAAGGTGTCGTTGAAGAGCTACTA 48889
Query 40749 TGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGG 40808
||||| |||| ||| | ||| || || || ||||||| || | |||||| | ||||||
Sbjct 48888 TGGTTCATCAGAGGATCTACGAACGCGAAAGAATTATCCGACAAAGGAGTTAAAATTTGG 48829
Query 40809 AATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGT 40868
|| || | ||| | | | |||| || | | ||||| |||| || || ||||||
Sbjct 48828 AACCCGAATAGTACCAGAGAATATCTGGATTCTTTGGGATTCAAAGACAGAGAAGAAGGT 48769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397066610617930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |