Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7792 134 1e-26 seq13914 105 5e-18 seq53791 95.1 1e-14 seq54470 82.4 6e-11 >seq7792 Length=27931 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 |||| ||||| || |||||| | ||| |||| | |||||||||||||| | |||| Sbjct 19396 TGTTCAATGCTATTGAAACAATGCCTTGTGTTAAGAAGAAAGCAGACTGGGCGTTGAAAT 19337 Query 44100 GGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 ||||| || ||||| | ||||||||||| | | | |||||||| | || |||| Sbjct 19336 GGATAGCTGATAAAAATGCTACTTTTGGAGAAAGGATCATAGCGTTTGCTGCCGTCGAAG 19277 Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216 |||| |||||||||||| ||||| || ||||||||| | || || ||||| | |||| Sbjct 19276 GCATCTTCTTTTCAGGAAGTTTTGCTGCAATATTTTGGCTTAAAAAGCGAGGCCTAATGC 19217 Query 44217 CTGGGTTGACGTTTTCA--AATGAGTTAATA 44245 |||| ||||| ||||| || || |||||| Sbjct 19216 CTGGATTGAC--TTTCAGTAACGAATTAATA 19188 Score = 105 bits (116), Expect = 5e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| | || ||||| || || ||||| || || ||||||||||| || || || Sbjct 19655 GTTCTTGCATTTTTCGCCGCATCTGACGGTATCGTGAATGAAAATTTAGTCGAGCGCTTC 19596 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 |||||||||||| | || ||||| ||| || || || ||||| || ||||||| Sbjct 19595 TTTCAAGAAGTTCAAATCCCCGAAGCTAGATTCTTCTACGGATTTCAGATCACCATAGAG 19536 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||||| |||||||||||| | ||||||| || ||| |||| ||| Sbjct 19535 AATGTTCATTCAGAAATGTACAGTTTATTGATAGACACATACGTCAAGGAT 19485 >seq13914 Length=11729 Score = 105 bits (116), Expect = 5e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||||| || ||||| ||||| || || || || ||||||||||| || || ||| Sbjct 8368 GTTTTAGCATTTTTCGCTGCCTCTGATGGTATCGTTAATGAAAATTTAGTCGAGCGTTTT 8309 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 |||||||| ||| | || ||||| ||| |||||| || |||||||| | || || Sbjct 8308 TTCCAAGAAGTACAAATTCCTGAAGCCAGATTTTTTTACGGATTTCAAATCACAATTGAG 8249 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| | ||||| ||||||||||| | |||| || || ||||| |||||| Sbjct 8248 AATGTACATTCAGAAATGTACAGCTTGTTGATTGACACTTACATTAAAGAT 8198 Score = 104 bits (114), Expect = 2e-17 Identities = 152/210 (72%), Gaps = 9/210 (4%) Strand=Plus/Minus Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 || ||||| || ||||| | || || | | | | | ||||| |||||||| | || || Sbjct 8105 TTCAATGCCATTGAAACCATGCCGTGTGTTAAGAGA-AAAGCTGACTGGGCGTTGAAGTG 8047 Query 44101 GATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 ||||||| ||| | ||||||||||| || | | || ||||| | ||| ||||| Sbjct 8046 GATAAATGACAAAAACGCGACTTTTGGAGAAAGAATCATAGCTTTTGCTGCTGTCGAAGG 7987 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 ||||||||||| ||| ||||| || ||||||||| | || ||| | || | ||||| Sbjct 7986 TATTTTCTTTTCTGGAAGTTTTGCTGCGATATTTTGGCTTAAAAAAAGGGGCCTAATGCC 7927 Query 44218 TGGGTTGACGTTTTCA--AATGAGTTAATA 44245 ||| |||| ||||| ||||| |||||| Sbjct 7926 TGGACTGAC--TTTCAGCAATGAATTAATA 7899 >seq53791 Length=16609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG---GT 19605 ||||| ||||| ||| | |||||| | || || |||||||| |||||| |||| || Sbjct 5811 TTGCATATTATTATATTCGATGAAATTGATGCCATCTGTAAAGCAAGAGGCTCTGTTGGT 5752 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | |||| || || || ||||| ||||| |||||| | || | ||| | || || || Sbjct 5751 GGAAATACGGGTGTTCACGACACAGTTGTTAATCAATTATTGGCCAAAATTGATGGCGTA 5692 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||||| || |||||| | || ||||| ||||| ||||| || | || ||| Sbjct 5691 GAACAACTCAACAATATTCTGGTCATTGGTATGACAAATAGGAAAGATATGATTGACGAA 5632 Query 19723 GCCTTATTACGACCCGG 19739 || | ||||||||||| Sbjct 5631 GCTCTTTTACGACCCGG 5615 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 19319 TTAAACAATTG--GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTG 19376 ||||| | ||| |||||||| || || || | ||| | || || || |||||| Sbjct 6130 TTAAAAACTTGTAGGATGTAAGCACGTAAAGGGTATATTGTTGTACGGACCTCCGGGTAC 6071 Query 19377 TGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAAT 19436 ||| |||||||| || || | || || | ||| | | | | | || ||||| Sbjct 6070 TGGTAAAACATTGATGGCTCGTCAAATTGGCAAAATGTTGAATGCTCGAGAACCAAAAAT 6011 Query 19437 TGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACG 19496 |||||| |||||| |||| || | || ||||| || |||| |||| || | || || Sbjct 6010 TGTAAACGGTCCTCAAATATTGGACAAGTATGTTGGAGAATCTGAAGCCAACATTCGTCG 5951 Query 19497 TTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 |||||||||||||||||||||||| ||||| Sbjct 5950 ATTGTTTGCTGACGCTGAAGAAGAAGAAAAA 5920 >seq54470 Length=54847 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 40689 CAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTA 40748 ||||||||| | || || || ||| | | ||||||||||| | | ||||| || || Sbjct 48948 CAGTTTCCGCTACTGACCACGAAACGAGTATTTTGGAAAGGTGTCGTTGAAGAGCTACTA 48889 Query 40749 TGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGG 40808 ||||| |||| ||| | ||| || || || ||||||| || | |||||| | |||||| Sbjct 48888 TGGTTCATCAGAGGATCTACGAACGCGAAAGAATTATCCGACAAAGGAGTTAAAATTTGG 48829 Query 40809 AATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGT 40868 || || | ||| | | | |||| || | | ||||| |||| || || |||||| Sbjct 48828 AACCCGAATAGTACCAGAGAATATCTGGATTCTTTGGGATTCAAAGACAGAGAAGAAGGT 48769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397066610617930