Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq9614 425 2e-114 seq19165 387 5e-103 >seq9614 Length=652 Score = 425 bits (470), Expect = 2e-114 Identities = 299/340 (88%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 20459 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCGAACC 20518 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 20519 ATAACCGCCATCGCTGGACTGTCGAAGAATGCAGGGCGATCAAGGCGAAGTATCAGCAGA 20578 |||||||||||||||||||| ||||||| |||| |||||||||||| |||| || |||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 20579 AACTTAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACAGTAAAAACCAT 20638 |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 20639 TCCTGACATGCTCGTTGAGGCATATGAAAATCAGACCGAGGTAGCCAGAATACTGAACTG 20698 ||| |||||||||||||| |||| | ||||||||| || ||||| | | |||||| || Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413 Query 20699 TAGTCGCAACACGGTCAGAAAATACACTGGCGATAAAGAAGGGAAAAGACACGCTATCGT 20758 ||||||| ||||||||||||||| || |||||||| ||||||| ||||| ||||| Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353 Query 20759 CAACGGTGTTCTTATGGTTCACCGCGGATGGGGT-AAAGA 20797 ||||| ||||| |||||||| ||||||||| || ||||| Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313 >seq19165 Length=1007 Score = 387 bits (428), Expect = 5e-103 Identities = 232/244 (95%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3687 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 3746 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 252 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 193 Query 3747 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 3806 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 133 Query 3807 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCGCAACAATGAGTGGCAGATAT 3866 | ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 132 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 73 Query 3867 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 3926 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 72 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 13 Query 3927 TGAT 3930 |||| Sbjct 12 TGAT 9 Score = 158 bits (174), Expect = 4e-34 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 3379 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 3438 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 428 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 369 Query 3439 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 3495 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 368 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184268731991148