Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq54470 91.5 1e-13 >seq54470 Length=54847 Score = 91.5 bits (100), Expect = 1e-13 Identities = 230/338 (68%), Gaps = 15/338 (4%) Strand=Plus/Plus Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 ||||| |||||||| |||||||| |||||| || || ||||| || || |||| ||| Sbjct 48382 TGTGCGATCATGTAAGTGAGTAGGGAGTAACTGGCGATATTAAAAGGTACTCCTAAACCC 48441 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACA-CATAAAATTG 111905 ||||| | || | |||||| | ||||| |||| || | | ||| | ||||| || Sbjct 48442 ATATCGGCAGAACGTTGATACATTTGACACGATAATTCGCCAT-TAACAGCGTAAAACTG 48500 Query 111906 -ACAAAGTACA-TGACAAGGAGGCAATGCCATCCC-----ATTCATAAAGGGTCCCCATG 111958 || || ||| ||||||||||| | |||||| | || ||| || | || | | Sbjct 48501 CACTAA--ACAGTGACAAGGAGGTAGGGCCATCTTGGGTAAATC-TAACGGATTCCAA-G 48556 Query 111959 CACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGA 112018 | || | || || ||||| || | | |||| || |||| | |||||||| | Sbjct 48557 CGCATAAAATTATTCTTCTATCGTCGGGGTTATTTTTAATGGTATCAATGACATTTTGCA 48616 Query 112019 GCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATC-CAGTGTATGTTGCCCCATAG 112077 | || || || ||||| | ||||| || || ||| | |||| || || || Sbjct 48617 GTTGATCGATGCCTTTGTTGGAGTAATCGGCGTG-CATATCTTTGTACTCAGCTCCGAAG 48675 Query 112078 TGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCC 112115 ||||||||||||||||| |||| || || ||||| || Sbjct 48676 TGTCTCCATTGGAATCCGTAAACTGGACCGAGATCGCC 48713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391561609180918