Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq63578 158 1e-33
seq28572 158 1e-33
seq52934 105 8e-18
seq46443 105 8e-18
>seq63578
Length=26733
Score = 158 bits (174), Expect = 1e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||| | ||||| ||||| || ||||| || | || || || | |
Sbjct 12504 ATGCAAATTTTTCAAATTACGCTAACCGGAAAAACTATCACCTTGGAAGTGGAACCGTCT 12445
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| |||| || |||||||| ||||| || || || || || ||||||
Sbjct 12444 GATACTATTGAAAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATCCCACCCGACCAG 12385
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||| | ||||||| || ||||| ||| | || || | ||||||| | ||| || |||||
Sbjct 12384 CAGAGATTAATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACCTTGAGC-GATTATAA 12326
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| ||||||| ||||||||||||||| |||| || |||||||| ||||||
Sbjct 12325 TATCCAAAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGAGGTGGA 12277
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || ||||| ||||| || ||||| || | || || ||| ||
Sbjct 12048 ATGCAAATTTTCGTAAAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAGAGCCATCC 11989
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | || || || ||||| ||||| || || ||||| || ||||||
Sbjct 11988 GATACAATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCCGACCAG 11929
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| ||||||| || ||||| ||| | || || | || || || || || |||
Sbjct 11928 CAGCGATTAATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATTACAAT 11869
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||||||||| || ||| | ||||| ||||||||||||||
Sbjct 11868 ATCCAAAAGGAATCCACCCTACATTTGGTCTTACGTCTTCGCGGTGG 11822
Score = 143 bits (158), Expect = 3e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || || || |||||||| || || |||||| | || ||||| ||
Sbjct 12732 ATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCATCC 12673
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | || || || ||||| || || || ||||| || || ||||||
Sbjct 12672 GATACGATCGAAAACGTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGACCAG 12613
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|| || |||||||||| ||||| ||| | || |||| || || | ||| ||||| ||
Sbjct 12612 CAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGC-GACTACAA 12554
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | ||||| ||||| || |||||| | ||| | ||||||||||| ||
Sbjct 12553 TATTCAAAAAGAATCGACGCTTCATTTGGTCCTACGTCTTCGCGGCGG 12506
Score = 141 bits (156), Expect = 1e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || | ||||||||||||||||| | || || || |
Sbjct 11593 AATGCAAATTTTCGTGAAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTC 11534
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | || |||| ||||||||||| || || || || || || || |||||
Sbjct 11533 CGATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCTGACCA 11474
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | ||||| ||||| |||||| | || |||| || || || || |||||
Sbjct 11473 GCAGAGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGATTATAA 11414
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| | || ||||| ||||| |||||| | || ||||||||||| || |||||
Sbjct 11413 TATTCAGAAGGAGTCCACCCTTCATTTGGTTTTGCGTCTTCGTGGCGGACA 11363
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || ||||| || || || || || || | ||||| || |
Sbjct 11820 ATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCC 11761
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| |||| | || |||||||||||||| || || || || || |||||||||
Sbjct 11760 GATACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAG 11701
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | || ||||| ||||| || | || |||| ||||| || || |||||
Sbjct 11700 CAACGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAAC 11641
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
| || || ||||||||||||||
Sbjct 11640 ATTCAGAAAGAATCCACTCTTCA 11618
>seq28572
Length=14732
Score = 158 bits (174), Expect = 1e-33
Identities = 161/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || |||||||| | || || || ||||| || || ||||| ||| | |
Sbjct 2516 AATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATCACACTCGAGGTCGAGCCTAG 2457
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | |||| | ||||| |||||||| || |||||||||||||| || || ||
Sbjct 2456 TGACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCCCCTGATCA 2397
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| ||||| || ||||||||||| |||||||| |||| | || || | ||||||||
Sbjct 2396 GCAACGTCTTATCTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCGGACTATAA 2337
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
||||||| ||||| || | ||| ||||
Sbjct 2336 CATCCAAAAAGAATCGACATTGCATTTAGT 2307
Score = 152 bits (168), Expect = 6e-32
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || || || || || || || || || ||||| || || ||| | ||
Sbjct 2287 ATGCAAATCTTCGTTAAAACCCTAACGGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2228
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||||||||| || || ||||| |||||||| ||||| ||
Sbjct 2227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCCCCAGATCAA 2168
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||||||||| || || |||||||| |||| || ||||| | || || |||
Sbjct 2167 CAACGTTTAATTTTTGCCGGCAAACAACTCGAAGATGGCCGAACCCTCTCCGATTACAAT 2108
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614
| ||||||||||| ||| | ||||| ||
Sbjct 2107 ATTCAAAAGGAATCAACTTTACATCTCGT 2079
Score = 149 bits (164), Expect = 7e-31
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || ||||| || | || || || || || || || || || ||| | ||
Sbjct 2059 ATGCAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGT 2000
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | ||||| ||||| || || ||||||||||||||||||||||||
Sbjct 1999 GACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAG 1940
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| ||||| || || || |||||||| || | | || || | || ||||||
Sbjct 1939 CAACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAAT 1880
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615
| ||||| ||||| ||||||||| |||||
Sbjct 1879 ATTCAAAAAGAATCGACTCTTCATTTAGTC 1850
Score = 147 bits (162), Expect = 2e-30
Identities = 159/211 (75%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| |||||||| | || || || || ||||| || || |||||| | |
Sbjct 2972 AATGCAAATCTTCGTCAAGACCTTGACTGGTAAAACGATTACACTCGAAGTTGAGCCTAG 2913
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| | ||||| ||||| || || || ||||||||||| || || ||
Sbjct 2912 CGACACTATTGAAAACGTCAAGGCCAAAATACAAGATAAAGAGGGAATTCCACCCGATCA 2853
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||||| || || ||||| || |||||||| |||| | || || | ||||||||
Sbjct 2852 ACAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGAAGAACTCTCTCTGACTATAA 2793
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615
||||||| ||||| || |||||| |||||
Sbjct 2792 CATCCAAAAAGAATCGACCCTTCATTTAGTC 2762
Score = 145 bits (160), Expect = 9e-30
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || || || | |||||||| || || ||||| || || ||| | |
Sbjct 3199 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGC 3140
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||||| ||||||||||| || || || || ||||| ||||||
Sbjct 3139 GACACGATTGAAAACGTCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCAG 3080
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| ||||| || ||||| |||||||| |||| | | || || | ||||||||
Sbjct 3079 CAACGTCTGATTTTCGCCGGTAAACAACTCGAAGATGGTAGAACACTTTCGGACTATAAC 3020
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
||||||| ||||| ||| | ||| | || | |||||
Sbjct 3019 ATCCAAAAAGAATCTACTTTACATTTGGTTCTCCGTCT 2982
Score = 141 bits (156), Expect = 1e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || ||||| || | || || || || || ||||| || || ||| | ||
Sbjct 2743 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2684
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | |||| | ||||||||||||||||| |||||||||||||| || || ||
Sbjct 2683 GACACCATCGAAAATGTCAAGGCTAAAATTCAGGATAAGGAGGGAATTCCCCCTGATCAA 2624
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| ||||||| || ||||| |||||||| || | || || || | || || ||
Sbjct 2623 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGATTACAAC 2564
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
||||||| ||||| || | ||| | || | ||||| || || |||
Sbjct 2563 ATCCAAAAAGAATCGACATTACATTTGGTTCTCCGTCTCCGAGGAGGA 2516
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | ||||| || || |||||||| || || || | |
Sbjct 1831 ATGCAAATCTTCGTTAAGACCTTGACCGGTAAAACGATTACTCTCGAAGTCGAACCTAGC 1772
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | |||||||| || || ||||| || ||||| ||||| || |||
Sbjct 1771 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAG 1712
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| ||||||| || || ||||| || || |||| | | || || | || || |||
Sbjct 1711 CAACGTTTAATTTTCGCCGGAAAGCAGCTTGAAGATGGTAGAACTCTTTCGGATTACAAT 1652
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || || ||| | || ||||| ||||| |||||
Sbjct 1651 ATCCAGAAAGAGTCGACGCTGCATTTGGTGTTGCGACTTCGTGGTGG 1605
Score = 131 bits (144), Expect = 2e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || || ||| | || || || || || || || || ||||| | |
Sbjct 3428 AATGCAGATCTTCGTAAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTTGAACCGAG 3369
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | ||||| |||||||| || ||||| || |||||||| || ||
Sbjct 3368 TGATACGATCGAAAACGTCAAGGCGAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCA 3309
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||||| || || ||||| ||||||||||| || | || || || | || || ||
Sbjct 3308 ACAACGTCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGAACGCTTTCCGATTACAA 3249
Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609
| ||||||||||||| ||| | |||
Sbjct 3248 TATCCAAAAGGAATCGACTTTACAT 3224
>seq52934
Length=6696
Score = 105 bits (116), Expect = 8e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || || || || || || || || || ||||| || || || |
Sbjct 4155 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCG 4096
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || ||||||||||| || || || || || ||||| ||||||
Sbjct 4095 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAG 4036
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || || || |||||| | || |||| | | || ||| | || || |||
Sbjct 4035 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAAT 3976
Query 27586 GTCCAAAA 27593
|||||||
Sbjct 3975 ATCCAAAA 3968
>seq46443
Length=17015
Score = 105 bits (116), Expect = 8e-18
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567
|| |||||||| ||||| || ||| | |||||||||||||| |||||||| |||| |||
Sbjct 12819 GGCATTCCTCCTGACCAACAACGTTTGATTTTTGCTGGTAAACAACTCGAAGATGGACGT 12760
Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
||||| | || ||||| ||||||| ||||| ||||| ||| |||| |||
Sbjct 12759 ACCCTTTCCGATTATAACATCCAAAAAGAATCTACTCTGCATTTAGTATTG 12709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569737337852320
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