Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq9614 421 3e-113 seq19165 295 3e-75 >seq9614 Length=652 Score = 421 bits (466), Expect = 3e-113 Identities = 298/340 (88%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 25903 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCGAACC 25962 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 25963 ATAACCGCCATCGCTGGACTGTCGAAGAATGCAGGGCGATCAAGGCGAAGTATCAGCAGA 26022 |||||||||||||||||||| ||||||| |||| |||||||||||| |||| || |||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 26023 AACTTAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACAGTAAAAACCAT 26082 |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 26083 TCCTGACATGCTCGTTGAGGCATATGAAAATCAGACCGAGGTAGCCAGAATACTGAACTG 26142 ||| |||||||||||||| |||| | ||||||||| || ||||| | | |||||| || Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413 Query 26143 TAGTCGCAACACGGTCAGAAAATACACTGGCGATAAAGAAGGAAAAAGACACGCTATTGT 26202 ||||||| ||||||||||||||| || |||||||| || |||| ||||| || || Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353 Query 26203 CAACGGTGTTCTTATGGTTCATCGCGGATGGGGT-AAAGA 26241 ||||| ||||| |||||||||||||||||| || ||||| Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313 >seq19165 Length=1007 Score = 295 bits (326), Expect = 3e-75 Identities = 184/198 (93%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 9827 TTTCCAGTTCTGCTATGTGCTTACTTCCATCCGAGATAACGCCCTCGTAATACTCACGCT 9886 ||||||||| || || ||||||| |||||||||||||| || |||||||||||||||| Sbjct 507 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 448 Query 9887 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACGCGCAGCTTCCCTACCGTTAGCG 9946 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct 447 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 388 Query 9947 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 10006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 328 Query 10007 CCAGCAGTGCCAGCGCAA 10024 |||||||| ||||| ||| Sbjct 327 CCAGCAGTTCCAGCACAA 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203096830019380