Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq9614 421 3e-113 seq19165 295 3e-75 >seq9614 Length=652 Score = 421 bits (466), Expect = 3e-113 Identities = 298/340 (88%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 25960 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCGAACC 26019 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 26020 ATAACCGCCATCGCTGGACTGTCGAAGAATGCAGGGCGATCAAGGCGAAGTATCAGCAGA 26079 |||||||||||||||||||| ||||||| |||| |||||||||||| |||| || |||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 26080 AACTTAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACAGTAAAAACCAT 26139 |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 26140 TCCTGACATGCTCGTTGAGGCATATGAAAATCAGACCGAGGTAGCCAGAATACTGAACTG 26199 ||| |||||||||||||| |||| | ||||||||| || ||||| | | |||||| || Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413 Query 26200 TAGTCGCAACACGGTCAGAAAATACACTGGCGATAAAGAAGGAAAAAGACACGCTATTGT 26259 ||||||| ||||||||||||||| || |||||||| || |||| ||||| || || Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353 Query 26260 CAACGGTGTTCTTATGGTTCATCGCGGATGGGGT-AAAGA 26298 ||||| ||||| |||||||||||||||||| || ||||| Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313 >seq19165 Length=1007 Score = 295 bits (326), Expect = 3e-75 Identities = 184/198 (93%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 9884 TTTCCAGTTCTGCTATGTGCTTACTTCCATCCGAGATAACGCCCTCGTAATACTCACGCT 9943 ||||||||| || || ||||||| |||||||||||||| || |||||||||||||||| Sbjct 507 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 448 Query 9944 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACGCGCAGCTTCCCTACCGTTAGCG 10003 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct 447 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 388 Query 10004 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 10063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 328 Query 10064 CCAGCAGTGCCAGCGCAA 10081 |||||||| ||||| ||| Sbjct 327 CCAGCAGTTCCAGCACAA 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210724549780536