Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq9614 425 2e-114 seq19165 168 3e-37 >seq9614 Length=652 Score = 425 bits (470), Expect = 2e-114 Identities = 299/340 (88%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 24241 ATCGTGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 24300 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 24301 ATAGTCGCCACCGCTGGACTGTCGAAGAGTGCAAGGCGATCAAGGCAGAGTATCAACAGA 24360 ||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 24361 AACTTAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACCGTAAAAACCAT 24420 |||| |||||||||||||| |||||||||||||||||||||||||| | ||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 24421 TCCTGACATGCTTGTTGAGGCATATGGAAATCAGACCGAAGTGGCCCGAATACTGAACTG 24480 ||| |||||||| ||||| |||| ||||||||||| ||||| || || | |||||| || Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413 Query 24481 CAATCGTGCCACAGTCAGAAAATACATTGGCGATAAAGAAGGGAAAAGACACGCTATCGT 24540 | ||| | || |||||||||||| ||| |||||||| ||||||| ||||| ||||| Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353 Query 24541 CAACGGTGTTCTTATGGTTCACCGCGGATGGGGT-AAAGA 24579 ||||| ||||| |||||||| ||||||||| || ||||| Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313 >seq19165 Length=1007 Score = 168 bits (186), Expect = 3e-37 Identities = 176/226 (78%), Gaps = 14/226 (6%) Strand=Plus/Minus Query 7560 TCAAGCTCAACACGCAGCTTTCCTACCGTTAGCGCAATCTCCTCGTTCTCCTGGTCGCGC 7619 ||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||| Sbjct 421 TCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGG 362 Query 7620 TGTTTAATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCACAACCTGAGGT 7679 |||| ||||||||||||||||||||| |||||||||||||| ||||||||| | ||| Sbjct 361 CGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGT 302 Query 7680 GTGGC--TTTCATACGAAATGCCAG---CAATTTTTGAGGCGT--TGCTACTGTTTCAAT 7732 || | ||||| ||| | | | ||| | || ||| ||| | || Sbjct 301 GTTACCAATTCATGGAAAAGGTCTGCGTCAAATCCCCAGTCGTCATGC-ATTG-----CC 248 Query 7733 TGCTACTGCCGCCTCACGCAGTGCCTGGTAATTAATTTTGCTCACT 7778 |||| ||||||| |||||||||||||| | ||||||| ||||||| Sbjct 247 TGCT-CTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACT 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200801480988152