Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq19165 282 2e-71 seq9614 136 2e-27 >seq19165 Length=1007 Score = 282 bits (312), Expect = 2e-71 Identities = 180/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 58287 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 58346 ||||||||| || || |||||||| ||||||| ||| || || |||||||| ||||||| Sbjct 507 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 448 Query 58347 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACGCGCAGCTTCCCTACCGTAAGCG 58406 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| || |||| Sbjct 447 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 388 Query 58407 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 58466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 328 Query 58467 CCAGCAGTGCCAGCAC 58482 |||||||| ||||||| Sbjct 327 CCAGCAGTTCCAGCAC 312 Score = 145 bits (160), Expect = 3e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 58991 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 59050 ||||||||| |||||||||||| |||||||||| | ||||| ||||||||| || ||| Sbjct 209 GCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAA 150 Query 59051 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 59110 || || || || |||| || |||||| || ||||||||||||||||||||||| ||| Sbjct 149 GTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 90 Query 59111 CAATGAGTAGCAGAT 59125 |||||||| |||||| Sbjct 89 CAATGAGTGGCAGAT 75 >seq9614 Length=652 Score = 136 bits (150), Expect = 2e-27 Identities = 112/135 (83%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 19095 GGAAATCAGACAGAAGTCGCCAGAATACTGAACTGCAATCGTGCCACAGTCAGAAAATAC 19154 ||||||||||||||||| || | | |||||| || | ||| | || |||||||||||| Sbjct 447 GGAAATCAGACAGAAGTAGCACGCAGACTGAAATGTAGTCGCGGTACGGTCAGAAAATAC 388 Query 19155 ATTGATGATAAAGATGCGAAAAAGCACGCCGTCGTCAATGGCGTCCTTATGGTTCATCGC 19214 ||||||||||||| | ||||| ||||||| ||||||| | ||| || |||||||||||| Sbjct 387 GTTGATGATAAAGACGGGAAAATGCACGCCATCGTCAACGACGTTCTCATGGTTCATCGC 328 Query 19215 GGATGGGGT-AAAGA 19228 |||||| || ||||| Sbjct 327 GGATGGAGTGAAAGA 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194492563162884