Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq54470 98.7 9e-16 >seq54470 Length=54847 Score = 98.7 bits (108), Expect = 9e-16 Identities = 225/336 (67%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| ||||||||||| ||||| || | |||||| || || || || || || ||||| Sbjct 48379 ACATGTGCGATCATGTAAGTGAGTAGGGAGTAACTGGCGATATTAAAAGGTACTCCTAAA 48438 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | || |||||||| | || || || | || ||||| | |||| || Sbjct 48439 CCCATATCGGCAGAACGTTGATACATTTGACACGATAATTCGCCATTAACAGCGTAAAAC 48498 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || | ||| || || || || |||||| || | ||| ||| ||||| ||| Sbjct 48499 TGCACTAAACAGTGACAAGGAGGTAGGGCCATCTTGGGTAAATCTAACGGATTCCAAGCG 48558 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856 || | | || ||||| || || ||||| || | ||| || || || | ||||| Sbjct 48559 CATAAAATTATTCTTCTATCGTCGGGGTTATTTTTAATGGTATCAATGACATTTTGCAGT 48618 Query 6857 TGGTCCGCTCCCTGT-CCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 || | || | ||| | || || || || | | | ||||| || || ||||| Sbjct 48619 TGAT-CGATGCCTTTGTTGGAGTAATCGGCGTGCATATCTTTGTACTCAGCTCCGAAGTG 48677 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 |||||| ||||| ||||| || || || | ||||| Sbjct 48678 TCTCCATTGGAATCCGTAAACTGGACCGAGATCGCC 48713 Score = 98.7 bits (108), Expect = 9e-16 Identities = 225/336 (67%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 ||||| | || || || ||||| ||||| ||||||||||| || || ||||| | Sbjct 48713 GGCGATCTCGGTCCAGTTTACGGATTCCAATGGAGACACTTCGGAGCTGAGTACAAAGAT 48654 Query 34454 AGCGAAGCGGACTATTCGGG-ACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 | | || || || || | ||| | || | || ||||| | || || || ||| | Sbjct 48653 ATGCACGCCGATTACTCCAACAAAGGCATCG-ATCAACTGCAAAATGTCATTGATACCAT 48595 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 || ||||| || || ||||| || | | ||||| ||||| ||| ||| | || Sbjct 48594 TAAAAATAACCCCGACGATAGAAGAATAATTTTATGCGCTTGGAATCCGTTAGATTTACC 48535 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632 |||||| || || || || ||| | || || |||| | ||||| || | Sbjct 48534 CAAGATGGCCCTACCTCCTTGTCACTGTTTAGTGCAGTTTTACGCTGTTAATGGCGAATT 48475 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 || || || | |||||||| || | || ||||| ||||| || || || || || || Sbjct 48474 ATCGTGTCAAATGTATCAACGTTCTGCCGATATGGGTTTAGGAGTACCTTTTAATATCGC 48415 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 |||||| | || ||||| ||||||||||| ||||| Sbjct 48414 CAGTTACTCCCTACTCACTTACATGATCGCACATGT 48379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447811974733920