Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq63578 114 9e-21 seq46443 82.4 5e-11 seq28572 82.4 5e-11 >seq63578 Length=26733 Score = 114 bits (126), Expect = 9e-21 Identities = 165/233 (71%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| || ||||| ||| ||| || | || |||||| | Sbjct 12277 AATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACTATCACGTTAGAAGTCGAACCATC 12218 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||||| || ||| |||||| || ||||||||| | || Sbjct 12217 TGAC-----ACAATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCC 12163 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||| | |||||||| ||||| |||||||| || || | || | ||| ||| Sbjct 12162 GACCAGCAAAGATTAATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTGAGCGAC 12103 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || |||||| || ||||||| ||||||||| | ||||| || Sbjct 12102 TACAACATTCAGAAAGAGTCTACGCTGCATTTAGTTTTGCGTCTACGTGGTGG 12050 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| || || ||||||||||| || ||| ||||| | || || ||| Sbjct 12735 AAGATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCA 12676 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| |||| | || |||||| || || || |||||||| | || | Sbjct 12675 TCCGATACGATCGAAAAC--GTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTG 12618 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||||||||||||||||||||| ||||||||||| || | |||| ||| ||| | Sbjct 12617 ACCAGCAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACT 12558 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || |||||||| || | |||||||| | ||| | || ||||| Sbjct 12557 ACAATATTCAAAAAGAATCGACGCTTCATTTGGTCCTACGTCTTCGCGGCGG 12506 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| ||||||||| | || || || |||||| | || |||||| | Sbjct 11593 AATGCAAATTTTCGTGAAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTC 11534 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||| |||| || ||| ||||| || ||||||||| | ||| Sbjct 11533 CGA-----TACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCT 11479 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| | || ||||| || ||||| |||||||| || | |||| || |||| Sbjct 11478 GACCAGCAGAGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGAT 11419 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || || ||| ||| | ||||||||||||||| | |||||||| Sbjct 11418 TATAATATTCAGAAGGAGTCCACCCTTCATTTGGTTTTGCGTCTTCGTGGCGG 11366 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| || || || ||| ||| || | || || || || Sbjct 12048 ATGCAAATTTTCGTAAAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAGAGCCATCC 11989 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || ||| || || |||||||||||| |||| | Sbjct 11988 GA-----TACAATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCCG 11934 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || |||||||| ||||| ||||||||||| |||| |||| || ||||| Sbjct 11933 ACCAGCAGCGATTAATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATT 11874 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || ||| | |||||||| || ||| | || || || Sbjct 11873 ACAATATCCAAAAGGAATCCACCCTACATTTGGTCTTACGTCTTCGCGGTGG 11822 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || ||||| | |||||||| ||||| ||||||||||| Sbjct 12411 GACAAAGAAGGCATCCCACCCGACCAGCAGAGATTAATTTTCGCCGGTAAACAATTGGAA 12352 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | |||| |||||| || ||||||||||| |||| | ||||| ||||| Sbjct 12351 GACGGTCGTACCTTGAGCGATTATAATATCCAAAAAGAATCCACTCTTCATTTAGTTTTA 12292 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 12291 CGTCTTCGAGGTGG 12278 >seq46443 Length=17015 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || |||||||| || |||||| | || || | ||| | | | |||||| Sbjct 12807 GACCAACAACGTTTGATTTTTGCTGGTAAACAACTCGAAGATGGACGTACCCTTTCCGAT 12748 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 || |||||||||||||| ||| ||||||| || ||| | ||| | || |||| Sbjct 12747 TATAACATCCAAAAAGAATCTACTCTGCATTTAGTATTGAGATTGAGAGGTGGCG 12693 >seq28572 Length=14732 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| |||||||| ||||| |||||| | || |||| || | | |||||| Sbjct 2629 GATCAACAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGAT 2570 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||||||| || || ||||||||| | ||| | || || || Sbjct 2569 TACAACATCCAAAAAGAATCGACATTACATTTGGTTCTCCGTCTCCGAGGAGG 2517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355513760049822