Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq28572 150 4e-31 seq52934 127 5e-24 seq63578 125 2e-23 seq46443 98.7 2e-15 seq77090 87.8 4e-12 >seq28572 Length=14732 Score = 150 bits (166), Expect = 4e-31 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | || | || || || |||||||| ||||| || ||||||| ||| || Sbjct 1610 ACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGT 1669 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||||| |||||||| || ||||| || | ||||| || || ||||| | ||| Sbjct 1670 TCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCC 1729 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069 ||| ||||| |||||||| || ||||||||||||||||| ||| ||| || || Sbjct 1730 TTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTC---GCTAGGTTCGACTTC 1786 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || || | ||||| || || | ||||| Sbjct 1787 GAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || || |||||||| || ||||| | ||| || | || ||||| || ||||| || Sbjct 3230 AGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCCGTCTTCGAGTTGCTTTCC 3289 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| || |||||||| |||||||||| |||||||| || || || || || Sbjct 3290 AGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTCGCCTT 3349 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||||||||| || ||| |||||| ||||| ||||| || || || || | || Sbjct 3350 GACGTTTTCGATCGTATCACTCGGTTCAACTTCGAGGGTGATGGTTTTACCAGTCAACGT 3409 Query 211097 CTTTACAAACACCTGCATTTT 211117 ||||| || | ||||||||| Sbjct 3410 TTTTACGAAGATCTGCATTTT 3430 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || ||||||||||||||||| |||| ||| || ||||||||||| || || || || Sbjct 2319 GTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCA 2378 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || |||||||| ||||| || ||||| |||| ||| ||||| || || || || || Sbjct 2379 GCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 2438 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| |||||| || |||||||| ||||| || || || || | ||| Sbjct 2439 ACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTTAAGGTC 2498 Query 211098 TTTACAAACACCTGCATT 211115 || || || | |||||| Sbjct 2499 TTGACGAAAATTTGCATT 2516 Score = 134 bits (148), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| || || ||||||||||||||||| || | || || ||||||||| Sbjct 2760 AGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCT 2819 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| |||||||| || |||||||| || || |||| ||| || || || Sbjct 2820 TCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCT 2879 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || || || || |||||||| || ||||| ||| ||||| ||||| || ||| Sbjct 2880 TGTATTTTGGCCTTGACGTTTTCAATAGTGTC---GCTAGGCTCAACTTCGAGTGTAATC 2936 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || | ||||| || || | |||||| Sbjct 2937 GTTTTACCAGTCAAGGTCTTGACGAAGATTTGCATT 2972 Score = 134 bits (148), Expect = 3e-26 Identities = 151/201 (75%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||||||||||||||| |||| ||| || || |||||||| || || || || Sbjct 3002 AGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCGAGTTGTTTACC 3061 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || || ||||| ||||| ||||| | ||||| || ||||| || ||| || Sbjct 3062 GGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTGAATTTTTGCCTT 3121 Query 211037 CACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 |||||||| || ||||| ||| || || ||||||||||| || || || || | Sbjct 3122 GACGTTTTCAATCGTGTC---GCTAGGCTCGACTTCGAGAGTGATGGTTTTGCCGGTTAA 3178 Query 211094 AGTCTTTACAAACACCTGCAT 211114 || ||||| || | |||||| Sbjct 3179 GGTTTTTACGAAGATCTGCAT 3199 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || | ||| || || ||||| || || ||||| | ||||| | |||||| Sbjct 2076 AGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCT 2135 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || || || | |||||||| || || |||| ||||||||| || Sbjct 2136 TCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCT 2195 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || |||||||||||||||||| | || || ||||||||||| || Sbjct 2196 TGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTT 2255 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || || | ||||| Sbjct 2256 TTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||||||||| ||||| | ||| || | || ||||| || || || || Sbjct 2547 GTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCGAGTTGTTTACCG 2606 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | |||||||| ||||| |||| ||| ||||| ||||| || || || Sbjct 2607 GCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTGAATTTTAGCCTTG 2666 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||||||||||||| | || || ||||||||||| || || || || | || Sbjct 2667 ACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCAGTTAAGGTT 2726 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 2727 TTGACGAAAATCTGCAT 2743 >seq52934 Length=6696 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||||||||| || ||||| | || || || |||||||||| ||||| || ||||||| Sbjct 3966 CTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 4025 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | ||||| ||||| ||||| | ||||| || || || || || ||| || |||| Sbjct 4026 TCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 4085 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || || || ||| || |||||||||||||| || ||||| || || || || | Sbjct 4086 CAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGA 4145 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 4146 AGATCTGCAT 4155 >seq63578 Length=26733 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| | ||| || || | |||||||||||| ||||| || ||||||||||| || || Sbjct 11599 ACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGAGT 11658 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||| || || || ||||| | ||||| ||||| || || | || Sbjct 11659 ACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGTATGCC 11718 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||| || || ||| || ||||| ||||| || || ||| ||||| | Sbjct 11719 TTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCACCTCCAA 11778 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| || || || || | ||||| Sbjct 11779 GGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 123 bits (136), Expect = 6e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | |||||| | ||||| || || |||||||| || || || || | ||| | | Sbjct 12512 CGAAGACGTAGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATG-T 12570 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || || || || | ||||| |||||||| || | ||| Sbjct 12571 GCGGCCATCTTCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCC 12630 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || || ||||| ||| ||||||||||| || || || |||||| || | Sbjct 12631 TTCTTTATCTTGAATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAA 12690 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || ||||| || ||||| ||||| || | ||||| || Sbjct 12691 AGTAATGGTTTTTCCGGTAAGAGTTTTTACGAAGATTTGCATCTT 12735 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | || || | ||||||||||| ||||||||||| |||||||| | ||| ||| Sbjct 12284 CGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTCAA-GGT 12342 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||| || || || ||||| || | | || ||||| || || | || Sbjct 12343 ACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGGATGCC 12402 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || || || |||||||||||| || || ||||| ||| || || | Sbjct 12403 TTCTTTGTCTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACTTCCAA 12462 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || || ||| | ||||| Sbjct 12463 GGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCAT 12504 >seq46443 Length=17015 Score = 98.7 bits (108), Expect = 2e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || |||||||||||||||||||| | |||||| | ||||||||| || || Sbjct 12719 TGCAGAGTAGATTCTTTTTGGATGTTATAATCGGAAAGGGTACGTCCATCTTCGAGTTGT 12778 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || || || || || | ||||||||||||||||||| Sbjct 12779 TTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAA 12815 >seq77090 Length=20911 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||||||||| ||||| | ||| || | ||||||||| || ||||| || Sbjct 10602 GTCGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGTCCATCTTCAAGTTGCTTACCA 10543 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||||| || | |||||||| |||||||||| Sbjct 10542 GCGAAAATCAAACGTTGTTGATCAGGAGGAA 10512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157958136468890