Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq63578 100 2e-16 seq28572 95.1 1e-14 >seq63578 Length=26733 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| ||||||||||| ||| || ||||| ||||| |||||| | || || || Sbjct 11834 CGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCG 11893 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||| || || || || | ||||||||||||| || | | |||||| Sbjct 11894 TCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTG 11953 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || || || ||| | || | | |||||| | ||| || |||| ||||||| Sbjct 11954 TCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGATA 12013 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || |||||||| || || |||||||| Sbjct 12014 GTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 93.3 bits (102), Expect = 4e-14 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || |||| | ||||| || ||||| || ||| ||||| Sbjct 12261 TAACGAAAATTTG--CATTCCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTT 12318 Query 39099 TTGTATATTATAATCG-GCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAA 39157 ||| |||||||||||| |||| || || |||| || | ||||| || || || || | Sbjct 12319 TTGGATATTATAATCGCTCAAG-GTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTA 12377 Query 39158 GACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA 39217 | ||||||||||| || | || |||||||| ||||| ||| | | | | Sbjct 12378 ATCTCTGCTGGTCGGGTGGGATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTTTCAA 12437 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 ||||| || ||||| |||| |||||| ||||||| || ||||| | ||| | Sbjct 12438 TAGTATCAGACGGTTCCACTTCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAA 12497 Query 39278 TTTGCAT 39284 ||||||| Sbjct 12498 TTTGCAT 12504 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||||| || || |||||||| || || || | || || Sbjct 11612 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCC 11671 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | |||||| || ||||| || | || |||||||| | || | || ||||| ||| Sbjct 11672 AACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGTATGCCTTCTTTATCCTGA 11731 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| ||||| | | | |||||| || ||||| |||| || || ||||| Sbjct 11732 ATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCACCTCCAAGGTTATGGTTTTT 11791 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||||||||| || |||||||| Sbjct 11792 CCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||||||| ||||| |||||||| ||||| || ||| | ||| || | Sbjct 12518 CGTAGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCA 12577 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || | ||||| || ||||| || | || |||||||| |||||| || ||||| Sbjct 12578 TCTTCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCT-TCTTT 12636 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || || || ||||| | | | ||||||| | || || |||| || || Sbjct 12637 ATCTTGAATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAAT 12696 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||| || || ||||| || |||||||||||||| Sbjct 12697 GGTTTTTCCGGTAAGAGTTTTTACGAAGATTTGCATCTT 12735 >seq28572 Length=14732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||||| || || | ||| | ||||| || || |||| Sbjct 2046 ACGAAAATTTG--CATACCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTT 2103 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| ||||||| || ||||| | || || || |||||||| ||||| || | || Sbjct 2104 GAATATTGTAATCGGAGAGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAAC 2163 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | || || || | ||| | | || || || |||||| |||| | | | | Sbjct 2164 GTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGG 2223 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || || | ||| || || | ||||| |||| ||||| || |||||||| ||||||| Sbjct 2224 TGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTT 2283 Query 39281 GCAT 39284 |||| Sbjct 2284 GCAT 2287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| ||||| |||||| || ||||| ||||| | ||| |||| | Sbjct 1617 CGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTACCA 1676 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| || || || || || | ||| ||||| |||| || | | |||||| Sbjct 1677 TCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCTTTG 1736 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || |||| | | | || ||||| | || || || | || || Sbjct 1737 TCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGAGTAATC 1796 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| || ||||| ||||||||||| Sbjct 1797 GTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429124772296418