Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq28572 143 6e-29 seq63578 138 3e-27 seq52934 131 4e-25 seq77090 84.2 5e-11 >seq28572 Length=14732 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || | || || || || ||||| |||| ||||||||| | | ||| Sbjct 1610 ACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGT 1669 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| |||||||| || ||||| || | ||||| || ||||| || || || Sbjct 1670 TCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCC 1729 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| || |||||||||||| | ||| || || | Sbjct 1730 TTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAG 1789 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||| || || | ||| | |||||| Sbjct 1790 AGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||| ||||||| ||||||||||| | |||| || ||||| || ||||| || Sbjct 3230 AGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCCGTCTTCGAGTTGCTTTCC 3289 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| || |||||||| || || |||||||||||||| ||||| || || ||| Sbjct 3290 AGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTCGCCTT 3349 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || |||||| || || | ||| || || | ||||| || || || ||||| || Sbjct 3350 GACGTTTTCGATCGTATCACTCGGTTCAACTTCGAGGGTGATGGTTTTACCAGTCAACGT 3409 Query 225696 TTTTATGAACACTTGCATTTT 225716 ||||| ||| | |||||||| Sbjct 3410 TTTTACGAAGATCTGCATTTT 3430 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || ||||| ||||||||||| | ||| ||||| | | |||||| || ||| Sbjct 1848 AGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCT 1907 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||| || || ||||| ||||| || ||||| || ||||| ||| Sbjct 1908 TCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCT 1967 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| ||| |||||| ||||| | || || || | ||||| || Sbjct 1968 TGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTT 2027 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| | ||| | |||||| Sbjct 2028 TTACCTGTTAAGGTTTTGACGAAAATTTGCAT 2059 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || | ||| ||||| ||||| | ||||||||||| | |||| |||||| Sbjct 2076 AGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCT 2135 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | |||||||| || || ||||| |||||||| ||| Sbjct 2136 TCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCT 2195 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || |||||||||||| || || || || | ||||| || Sbjct 2196 TGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTT 2255 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||||| | ||| | |||||| Sbjct 2256 TTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || || ||||||||||||| || || || | | |||||| |||||| Sbjct 2760 AGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCT 2819 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||||||||| || |||||||| ||||| ||||| || || || ||| Sbjct 2820 TCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCT 2879 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| || ||| || ||||| | || || || | || ||||| Sbjct 2880 TGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTT 2939 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | ||| | ||||||| Sbjct 2940 TTACCAGTCAAGGTCTTGACGAAGATTTGCATT 2972 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||||| || || || | | |||||| |||||||| || || || ||| Sbjct 2319 GTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCA 2378 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || |||||||| ||||| || || || ||||| || ||||| ||||| || || ||| Sbjct 2379 GCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 2438 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| ||||| | || || || | ||||| || || || || || || Sbjct 2439 ACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTTAAGGTC 2498 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | ||||||| Sbjct 2499 TTGACGAAAATTTGCATT 2516 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||||| |||||||||| | ||||| || ||||| || || || || Sbjct 2547 GTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCGAGTTGTTTACCG 2606 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | |||||||| || || ||||| || ||||| || || || || ||| Sbjct 2607 GCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTGAATTTTAGCCTTG 2666 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||||||||| || || || || | ||||| || || || || || ||| Sbjct 2667 ACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCAGTTAAGGTT 2726 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 2727 TTGACGAAAATCTGCAT 2743 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||||| || || || | | ||||| |||||||| || || || || Sbjct 3002 AGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCGAGTTGTTTACC 3061 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||| || || ||||| ||||| || || || ||||| || || || || ||| ||| Sbjct 3062 GGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTGAATTTTTGCCTT 3121 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||| || ||||| | || || || | ||||| || ||||| || || || Sbjct 3122 GACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTGCCGGTTAAGGT 3181 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| ||| | ||||| Sbjct 3182 TTTTACGAAGATCTGCAT 3199 >seq63578 Length=26733 Score = 138 bits (152), Expect = 3e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| || | ||||| ||| |||||| | |||||||||| || Sbjct 12074 TGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTCTAATTGT 12133 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || | || ||| |||||||| || |||||||| || |||||||| ||| Sbjct 12134 TTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGGAT-TTT 12192 Query 225631 TGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||| ||| |||||| ||||| || | ||| || ||||||||||| || || || || Sbjct 12193 TGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACTTCTAACGTGATAGTTTTTCCAGT 12252 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | ||||| | ||| | ||||||| Sbjct 12253 GAGCGTTTTAACGAAAATTTGCATT 12277 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | | ||| | || || |||||||| ||||||| |||||||||| || || Sbjct 11828 CGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTG 11887 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | || || || ||||| || | ||| || |||||||| ||||||||| Sbjct 11888 CGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCT 11947 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||| ||||| || ||| ||||| || || || | || || || ||| Sbjct 11948 TCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAAC 12007 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | ||||||| ||| | |||||| Sbjct 12008 GTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 116 bits (128), Expect = 9e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||| || || | ||| |||||||||||||| || | || ||||| || ||| Sbjct 11599 ACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGAGT 11658 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||| || || || ||||| | |||||| ||||| || || || || Sbjct 11659 ACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGTATGCC 11718 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || || || || ||| || || ||| ||| ||||| || || | |||||| || | Sbjct 11719 TTCTTTATCCTGAAT-TTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCACCTCCA 11777 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || || || | ||||| | ||| | |||||| Sbjct 11778 AGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 111 bits (122), Expect = 4e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||||||||||| ||| |||||| ||| || | || ||||| | || Sbjct 12302 TGAAGAGTGGATTCTTTTTGGATATTATAATCGCTCAAGGTACGACCGTCTTCCAATTGT 12361 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || | || || |||||||| || || ||||| |||||||| || ||| Sbjct 12362 TTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGGATGCCTTCTTTGTCTTGAAT-TTT 12420 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| ||| || || || || | |||||| || || ||||| || || || || Sbjct 12421 GGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACTTCCAAGGTGATAGTTTTTCCGGT 12480 Score = 111 bits (122), Expect = 4e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | || || || ||||||||||| | |||||| ||| ||| || Sbjct 12512 CGAAGACGTAGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTG 12571 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | || || || || || || | ||||| ||||| || || || ||| Sbjct 12572 CGGCCATCTTCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCT 12631 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| ||||| || || |||||| || || || | ||| || || || Sbjct 12632 TCTTTATCTTGAATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAA 12691 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || || | |||||||| ||| | |||||| || Sbjct 12692 GTAATGGTTTTTCCGGTAAGAGTTTTTACGAAGATTTGCATCTT 12735 >seq52934 Length=6696 Score = 131 bits (144), Expect = 4e-25 Identities = 150/198 (76%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 225519 GGATT--CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||| ||||||||| ||||||||||| | |||||| |||||||| | ||||| || Sbjct 3959 GGATTACCTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCG 4018 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 |||||||| | ||||| |||||||| || |||||||| || ||||| || ||| || || Sbjct 4019 GCGAAGATCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAAT-TTTAGCTTT 4077 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | |||||||| || ||||| | || Sbjct 4078 TACATTTTCAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGT 4137 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | ||||| Sbjct 4138 TTTCACGAAGATCTGCAT 4155 >seq77090 Length=20911 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||||| |||||||| | | ||||| |||||||| || ||||| ||| Sbjct 10602 GTCGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGTCCATCTTCAAGTTGCTTACCA 10543 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||| || | |||||||| || || ||||| ||| Sbjct 10542 GCGAAAATCAAACGTTGTTGATCAGGAGGAATGCCT 10507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191302957707884