Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq28572 95.1 1e-14 seq63578 86.0 5e-12 >seq28572 Length=14732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | ||| | || ||||||||||| ||||||||||||||||||| Sbjct 2061 CCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAG 2120 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | |||||| | ||||||||| ||| | || | | |||||| ||| ||| Sbjct 2121 AGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGA 2180 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | ||||| || || ||||| || || | | | || || ||| | | | Sbjct 2181 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACT 2240 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||| || || ||||| ||||| | ||||||| || |||||||| Sbjct 2241 TCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 >seq63578 Length=26733 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || || ||||| | |||| ||| | ||| |||||||| ||||| || ||||| | Sbjct 11594 CCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTC 11653 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||||||||| ||||| || ||| | || | | ||| |||||| || Sbjct 11654 AGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGT 11713 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | ||||||||| || |||||| ||| |||| | | || || ||||| ||| Sbjct 11714 ATGCCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTATC---GGACG--GTT 11768 Query 101192 -----TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||| || ||||| || || | ||||||| ||||||||||| Sbjct 11769 CCACCTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409259453521974