Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq13914 131 1e-25
seq7792 131 1e-25
>seq13914
Length=11729
Score = 131 bits (144), Expect = 1e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
|| |||| ||| |||||||| || | | ||| |||||||| ||||||| ||| || ||
Sbjct 8196 GGATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATT 8255
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928
| || |||||||||||||| |||| ||||| | | ||| ||||| | |||| |
Sbjct 8256 GTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGC 8315
Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988
|| ||||| ||||| || || ||||| ||| ||| || ||||| || ||||| || ||
Sbjct 8316 TCGACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAA 8375
Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023
|| || | || || || || || ||||||| |||
Sbjct 8376 ATGAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCA 8410
Score = 116 bits (128), Expect = 3e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||||||||| || | ||| || || || | ||| ||||||| || || ||||
Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
||||||||||||| || ||||| ||||||||||| || ||||| || || ||||| |
Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005
Query 4690 CTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749
||| | || || || | | |||||| || ||||| || || ||||||| ||
Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065
Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791
||||| ||||||| ||||| || || | || || || ||||
Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATA 8107
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101
|||| | ||||||||| | ||||||||||| ||||||||||| ||| |||| | ||||||
Sbjct 8506 TAAAACCACTTCTTCAGCCGTCCAAAACGAGGCTTCCGCTTTCTTGAACATTGCCCAAAT 8565
Query 5102 ATCAGGATACTGAATCGGAAGTATGACAAATCT 5134
||| ||||| || || | ||| ||||||||
Sbjct 8566 GTCATCATACTTGATGGGCATTATAACAAATCT 8598
>seq7792
Length=27931
Score = 131 bits (144), Expect = 1e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 4821 TAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAAT 4880
|| |||||||| | || || |||||||| ||||| | ||| ||||| | |||||||||
Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554
Query 4881 CCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTT 4940
||||| ||| |||||||||| | | ||||||||| | | | || | || ||||| |||
Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614
Query 4941 TCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGT 5000
|| || || ||||||||| || || ||||| || | ||| || || || || | ||
Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674
Query 5001 TCGTCAGGCTTAAGTTTTTTCCAGT 5025
|| || || || ||||| | |||||
Sbjct 19675 TCTTCGGGTTTCAGTTTCTCCCAGT 19699
Score = 125 bits (138), Expect = 6e-24
Identities = 164/222 (74%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
||||||| || || | ||||||| || || ||||| ||||||| |||| |||||
Sbjct 19175 CTTCGTCCCTTGATATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 19234
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
||||||||||||| || ||||| || |||||||| |||||||| ||||| |||||||
Sbjct 19235 TAAGCCAAAATATTGCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACG 19294
Query 4690 CTACTAATCGGGAC-CCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747
||| | ||| | || || | ||| ||| || |||||||| || |||||||
Sbjct 19295 CTA-TGATCCTTTCTCCAAAAGTAGC-ATTTTTATCAGCTATCCATTTCAACGCCCAGTC 19352
Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789
||||| |||||||| || || ||||| | ||||| || ||
Sbjct 19353 TGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTGAA 19394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426631217638538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |