Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13914 131 1e-25 seq7792 131 1e-25 >seq13914 Length=11729 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||| |||||||| || | | ||| |||||||| ||||||| ||| || || Sbjct 8196 GGATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATT 8255 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 | || |||||||||||||| |||| ||||| | | ||| ||||| | |||| | Sbjct 8256 GTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGC 8315 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 || ||||| ||||| || || ||||| ||| ||| || ||||| || ||||| || || Sbjct 8316 TCGACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAA 8375 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || || | || || || || || ||||||| ||| Sbjct 8376 ATGAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCA 8410 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||||| || | ||| || || || | ||| ||||||| || || |||| Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 ||||||||||||| || ||||| ||||||||||| || ||||| || || ||||| | Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005 Query 4690 CTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 ||| | || || || | | |||||| || ||||| || || ||||||| || Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 ||||| ||||||| ||||| || || | || || || |||| Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATA 8107 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 |||| | ||||||||| | ||||||||||| ||||||||||| ||| |||| | |||||| Sbjct 8506 TAAAACCACTTCTTCAGCCGTCCAAAACGAGGCTTCCGCTTTCTTGAACATTGCCCAAAT 8565 Query 5102 ATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 ||| ||||| || || | ||| |||||||| Sbjct 8566 GTCATCATACTTGATGGGCATTATAACAAATCT 8598 >seq7792 Length=27931 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 4821 TAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAAT 4880 || |||||||| | || || |||||||| ||||| | ||| ||||| | ||||||||| Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554 Query 4881 CCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTT 4940 ||||| ||| |||||||||| | | ||||||||| | | | || | || ||||| ||| Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614 Query 4941 TCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGT 5000 || || || ||||||||| || || ||||| || | ||| || || || || | || Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674 Query 5001 TCGTCAGGCTTAAGTTTTTTCCAGT 5025 || || || || ||||| | ||||| Sbjct 19675 TCTTCGGGTTTCAGTTTCTCCCAGT 19699 Score = 125 bits (138), Expect = 6e-24 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 ||||||| || || | ||||||| || || ||||| ||||||| |||| ||||| Sbjct 19175 CTTCGTCCCTTGATATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 19234 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 ||||||||||||| || ||||| || |||||||| |||||||| ||||| ||||||| Sbjct 19235 TAAGCCAAAATATTGCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACG 19294 Query 4690 CTACTAATCGGGAC-CCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 ||| | ||| | || || | ||| ||| || |||||||| || ||||||| Sbjct 19295 CTA-TGATCCTTTCTCCAAAAGTAGC-ATTTTTATCAGCTATCCATTTCAACGCCCAGTC 19352 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||||| |||||||| || || ||||| | ||||| || || Sbjct 19353 TGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTGAA 19394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426631217638538