Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq54470 123 2e-23 >seq54470 Length=54847 Score = 123 bits (136), Expect = 2e-23 Identities = 230/338 (68%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273 || || || || |||||||| ||||| || ||||| |||||||| ||||| ||||| || Sbjct 48376 GTAACATGTGCGATCATGTAAGTGAGTAGGGAGTAACTGGCGATATTAAAAGGTACTCCT 48435 Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 | ||||| || | || | || || | |||||||| | || |||| ||||| Sbjct 48436 AAACCCATATCGGCAGAACGTTGATACATTTGACACGATAATTCGCCATTAACAGCGTAA 48495 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 27393 ||||| || ||| || ||||| || ||||| | || ||| || ||||| Sbjct 48496 AACTGCACTAAACAGTGACAAGGAGGTAGGGCCATCTTGGGTAAATCTAACGGATTCCAA 48555 Query 27394 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 27453 ||||| | || || | || || || ||||| || | ||| || | | | |||||| Sbjct 48556 GCGCATAAAATTATTCTTCTATCGTCGGGGTTATTTTTAATGGTATCAATGACATTTTGC 48615 Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513 || ||||| | || | ||||| || | ||| || ||||||| |||||||| Sbjct 48616 AGTTGATCGATGCCTTTGTTGGAGTAATCGGCGTGCATATCTTTGTACTCAGCTCCGAAG 48675 Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 || ||||||||||| ||||| || || || || || || Sbjct 48676 TGTCTCCATTGGAATCCGTAAACTGGACCGAGATCGCC 48713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369145192179566