Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 138 2e-27
seq59517 131 2e-25
seq13914 127 3e-24
seq19381 96.9 5e-15
>seq7792
Length=27931
Score = 138 bits (152), Expect = 2e-27
Identities = 158/212 (75%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236
|||||||||||| || || | || |||||||| || || ||||| ||||||||||||
Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248
Query 48237 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCT 48296
|| || ||| ||| |||||||| |||||||| ||||| ||||| || | | || |||
Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308
Query 48297 CCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACA 48353
|| || | || | || | |||||| ||||| || || |||||||| |||
Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACA 19368
Query 48354 CAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385
|||||||||||||| |||||||| || || ||
Sbjct 19369 CAAGGCATTGTTTCAATAGCATTGAACAGGAA 19400
Score = 104 bits (114), Expect = 3e-17
Identities = 158/225 (70%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
||| || ||||| || ||||| || | ||| |||||||| || |||| ||| || || |
Sbjct 19485 ATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGT 19544
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520
|||||||||||||| || |||| ||||| | ||| || || || | | || || ||
Sbjct 19545 GATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTC 19604
Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580
| ||||| ||||| || || || ||| || || |||||||| | || || |||
Sbjct 19605 GACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAAT 19664
Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625
|| | || || | || ||||||| | |||||| ||| |||
Sbjct 19665 GAACTTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709
Score = 89.7 bits (98), Expect = 7e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 48637 CTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCAC 48696
||||||||||||||||||||||||| || ||||| |||||| |||| ||| ||||||
Sbjct 19789 CTACTTCTTCAGCTGTCCAAAATGAAGCTTCTGCCTTTTTAAACATGGCCCAAATATCAT 19848
Query 48697 TGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733
||||| ||||| | || ||||||||| |||||
Sbjct 19849 CGTATTTAATTGGCATTATTACAAATCTACGAGGATT 19885
Score = 86.0 bits (94), Expect = 9e-12
Identities = 131/185 (71%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028
|| |||||| || || ||||| || || | ||||| | ||| | ||||||||| || |
Sbjct 18911 CAATCTATCAGCTACAAATTCAATGTAAGTCTTCATTAATTCGCTATTCATTCCAATCAT 18970
Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCAT--CCACTATT 48086
|| |||| |||||| || | ||| ||||||||||| | ||||| | | | || |
Sbjct 18971 CGATACGGGTAAAGCCTCTGTCAAAAATTCTTGTTCGATTGCAACAGCGTCACGAATAAT 19030
Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146
||| || | ||| |||||||| | | ||||||||| |||||||| || |||
Sbjct 19031 TTCG--GTAATTTCTTCAACACTTGGTTTTTGAATCAAATGTTTGAACATTAAGCAGGCA 19088
Query 48147 AAATC 48151
|||||
Sbjct 19089 AAATC 19093
Score = 84.2 bits (92), Expect = 3e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 47836 ACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTT 47895
|||||||||| |||| | |||||| || || | || ||||| ||||| ||||| || |
Sbjct 18703 ACATAACTCCACTTTTCTTATATTCTCCAACTCTCTTTTCGAAGAAATTCGTTTTACCAT 18762
Query 47896 CCAATGATATATTTTCCATAAAATCAAATGGATT 47929
||| |||||||||||||||||||| || || ||
Sbjct 18763 TCAAGGATATATTTTCCATAAAATCGAAAGGGTT 18796
>seq59517
Length=19559
Score = 131 bits (144), Expect = 2e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||||||||| |||| | ||| || || || ||||| ||||| | ||||
Sbjct 14726 TGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGAT 14667
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||| |||||||||||||| ||||| || |||||||| || | | || | |
Sbjct 14666 TCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAA 14607
Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306
||||| | || | | | | ||||| ||||||| || |||||||||| | ||| ||
Sbjct 14606 TTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATCAGAT 14547
Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAAT 77338
|| || | ||| | |||||| || | |||
Sbjct 14546 GGCTGGACGTTCCACATATCGTACTGCAAAAT 14515
>seq13914
Length=11729
Score = 127 bits (140), Expect = 3e-24
Identities = 163/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
|||||||| |||||| || || || | || |||||||| || || | ||| |||||||
Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520
|| ||||||||||||||| |||| ||||| | || ||||| || |||| || ||
Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317
Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580
| ||||| ||||| || || |||||| ||||| ||||||||||| || || |||
Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAAT 8377
Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625
|| | || || | || ||||||| | ||| || ||| |||
Sbjct 8378 GAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422
Score = 122 bits (134), Expect = 1e-22
Identities = 163/226 (72%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222
|||| ||||| |||||||| || || || || || |||||||| || | |||||
Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945
Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282
| ||||||||||| || || ||| |||||||||||| || ||||| || || ||||| |
Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005
Query 48283 CGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAG 48339
| | | ||| ||||| || | || || || | ||||||| ||||| ||||
Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065
Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385
| || |||| ||||| ||||| ||||| || ||||| || || ||
Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAGGAA 8111
>seq19381
Length=19756
Score = 96.9 bits (106), Expect = 5e-15
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAG--AAAGTAGATTGTATG 78462
||||| ||||| || ||||| ||||| ||||| || |||||| | | || ||| || |
Sbjct 8692 GCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATAGG 8635
Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522
|||||||| | || || || || ||||| || || || || ||||||||||| |
Sbjct 8634 TTTCAATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACATGT 8575
Query 78523 GCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582
|||| || | ||| || | ||| || |||||||| | || |||||||||| ||| |
Sbjct 8574 GCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAGTCT 8515
Query 78583 TAAA 78586
|||
Sbjct 8514 GAAA 8511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693970779423040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |