Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7792 138 2e-27 seq59517 131 2e-25 seq13914 127 3e-24 seq19381 96.9 5e-15 >seq7792 Length=27931 Score = 138 bits (152), Expect = 2e-27 Identities = 158/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 |||||||||||| || || | || |||||||| || || ||||| |||||||||||| Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248 Query 48237 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCT 48296 || || ||| ||| |||||||| |||||||| ||||| ||||| || | | || ||| Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308 Query 48297 CCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACA 48353 || || | || | || | |||||| ||||| || || |||||||| ||| Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACA 19368 Query 48354 CAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 |||||||||||||| |||||||| || || || Sbjct 19369 CAAGGCATTGTTTCAATAGCATTGAACAGGAA 19400 Score = 104 bits (114), Expect = 3e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| || ||||| || ||||| || | ||| |||||||| || |||| ||| || || | Sbjct 19485 ATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGT 19544 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 |||||||||||||| || |||| ||||| | ||| || || || | | || || || Sbjct 19545 GATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTC 19604 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | ||||| ||||| || || || ||| || || |||||||| | || || ||| Sbjct 19605 GACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAAT 19664 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || | || || | || ||||||| | |||||| ||| ||| Sbjct 19665 GAACTTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 48637 CTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCAC 48696 ||||||||||||||||||||||||| || ||||| |||||| |||| ||| |||||| Sbjct 19789 CTACTTCTTCAGCTGTCCAAAATGAAGCTTCTGCCTTTTTAAACATGGCCCAAATATCAT 19848 Query 48697 TGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 ||||| ||||| | || ||||||||| ||||| Sbjct 19849 CGTATTTAATTGGCATTATTACAAATCTACGAGGATT 19885 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || |||||| || || ||||| || || | ||||| | ||| | ||||||||| || | Sbjct 18911 CAATCTATCAGCTACAAATTCAATGTAAGTCTTCATTAATTCGCTATTCATTCCAATCAT 18970 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCAT--CCACTATT 48086 || |||| |||||| || | ||| ||||||||||| | ||||| | | | || | Sbjct 18971 CGATACGGGTAAAGCCTCTGTCAAAAATTCTTGTTCGATTGCAACAGCGTCACGAATAAT 19030 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 ||| || | ||| |||||||| | | ||||||||| |||||||| || ||| Sbjct 19031 TTCG--GTAATTTCTTCAACACTTGGTTTTTGAATCAAATGTTTGAACATTAAGCAGGCA 19088 Query 48147 AAATC 48151 ||||| Sbjct 19089 AAATC 19093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 47836 ACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTT 47895 |||||||||| |||| | |||||| || || | || ||||| ||||| ||||| || | Sbjct 18703 ACATAACTCCACTTTTCTTATATTCTCCAACTCTCTTTTCGAAGAAATTCGTTTTACCAT 18762 Query 47896 CCAATGATATATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||||||||||||||| || || || Sbjct 18763 TCAAGGATATATTTTCCATAAAATCGAAAGGGTT 18796 >seq59517 Length=19559 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||||||||| |||| | ||| || || || ||||| ||||| | |||| Sbjct 14726 TGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGAT 14667 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||| |||||||||||||| ||||| || |||||||| || | | || | | Sbjct 14666 TCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAA 14607 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 ||||| | || | | | | ||||| ||||||| || |||||||||| | ||| || Sbjct 14606 TTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATCAGAT 14547 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || || | ||| | |||||| || | ||| Sbjct 14546 GGCTGGACGTTCCACATATCGTACTGCAAAAT 14515 >seq13914 Length=11729 Score = 127 bits (140), Expect = 3e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| |||||| || || || | || |||||||| || || | ||| ||||||| Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || ||||||||||||||| |||| ||||| | || ||||| || |||| || || Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | ||||| ||||| || || |||||| ||||| ||||||||||| || || ||| Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAAT 8377 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || | || || | || ||||||| | ||| || ||| ||| Sbjct 8378 GAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||| ||||| |||||||| || || || || || |||||||| || | ||||| Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| || || ||| |||||||||||| || ||||| || || ||||| | Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAG 48339 | | | ||| ||||| || | || || || | ||||||| ||||| |||| Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 | || |||| ||||| ||||| ||||| || ||||| || || || Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAGGAA 8111 >seq19381 Length=19756 Score = 96.9 bits (106), Expect = 5e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAG--AAAGTAGATTGTATG 78462 ||||| ||||| || ||||| ||||| ||||| || |||||| | | || ||| || | Sbjct 8692 GCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATAGG 8635 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 |||||||| | || || || || ||||| || || || || ||||||||||| | Sbjct 8634 TTTCAATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACATGT 8575 Query 78523 GCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582 |||| || | ||| || | ||| || |||||||| | || |||||||||| ||| | Sbjct 8574 GCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAGTCT 8515 Query 78583 TAAA 78586 ||| Sbjct 8514 GAAA 8511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693970779423040