Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 145 1e-29
seq59517 140 5e-28
seq13914 131 2e-25
seq19381 120 4e-22
>seq7792
Length=27931
Score = 145 bits (160), Expect = 1e-29
Identities = 162/214 (76%), Gaps = 7/214 (3%)
Strand=Plus/Plus
Query 46666 ATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATA 46725
|||||||||||| || || | ||||||||||| || |||||||| |||||||||||
Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248
Query 46726 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCT 46785
|| || ||| ||| |||||||| |||||||| || || || || || | | || |||
Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308
Query 46786 CCGTAACTGGCATCATTATGA---ATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTA 46840
|| || | |||| |||| | ||||| ||| | ||||| || || || ||||| |
Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCA--TTTCAACGCCCAGTCTGCTTTCTTCTTAA 19366
Query 46841 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874
|||||||||||||||| |||||||| || || ||
Sbjct 19367 CACAAGGCATTGTTTCAATAGCATTGAACAGGAA 19400
Score = 116 bits (128), Expect = 5e-21
Identities = 163/226 (72%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
||| || || ||||| ||||| || | ||| |||||||||||||||| || || || |
Sbjct 19485 ATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGT 19544
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
|||||||||||||| || |||| ||||| | || || || ||| | | || || ||
Sbjct 19545 GATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTC 19604
Query 47010 AGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068
||| ||||| |||||||| || || ||| || || |||||||| | || || ||
Sbjct 19605 -GACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAA 19663
Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114
| || | || || |||| ||||||| | |||||| ||| |||
Sbjct 19664 TGAACTTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709
Score = 104 bits (114), Expect = 3e-17
Identities = 136/185 (74%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517
|| |||||| || || ||||| || || || ||||| | ||| | ||||||||| || |
Sbjct 18911 CAATCTATCAGCTACAAATTCAATGTAAGTCTTCATTAATTCGCTATTCATTCCAATCAT 18970
Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGA-TATT 46575
|| |||| |||||| || | ||| |||||||| || | ||||| || ||| || |
Sbjct 18971 CGATACGGGTAAAGCCTCTGTCAAAAATTCTTGTTCGATTGCAACAGCGTCACGAATAAT 19030
Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635
||| || | | ||| |||||||| || ||||||||||| |||||||| || |||
Sbjct 19031 TTCG--GTAATTTCTTCAACACTTGGTTTTTGAATCAAATGTTTGAACATTAAGCAGGCA 19088
Query 46636 AAATC 46640
|||||
Sbjct 19089 AAATC 19093
>seq59517
Length=19559
Score = 140 bits (154), Expect = 5e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||||||||| |||| || ||| || || || ||||| ||||| | ||||
Sbjct 14726 TGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGAT 14667
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||| |||||||||||||| ||||| || |||||||| || | | || | |
Sbjct 14666 TCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAA 14607
Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901
||||| | || | | | | ||||| ||||||| || |||||||||| | ||| |||
Sbjct 14606 TTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATCAGAT 14547
Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933
|| || | ||| | |||||| || | |||
Sbjct 14546 GGCTGGACGTTCCACATATCGTACTGCAAAAT 14515
Score = 116 bits (128), Expect = 5e-21
Identities = 124/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071
||||| || || |||||||| || | || || | | || || |||||||| ||||
Sbjct 13007 GTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTTTCAATCGCTGCG 12948
Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131
|| ||||| ||||||||||||||| || |||||||||||||| || || ||||||
Sbjct 12947 TCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGTTGTGGGCGTTCT 12888
Query 77132 ACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175
||| || ||||||||||| || || ||||||||||||||
Sbjct 12887 ACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844
Score = 86.0 bits (94), Expect = 9e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
||||| |||||||| ||||| || || | ||| || || || || | ||| |||| |
Sbjct 12539 CTAAAAAGTTTTTTAGTTTCTTTATGCAAATTGGAAACAGCAATACGAGCGGCTAACACA 12480
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
|| |||||||||||| | ||||| || ||| || |||| || | | | |||| |||
Sbjct 12479 GCGTAGTCAGGATGTCGAGTAGTCATGGAGGCAGCAGTTTCGGCGGAGAGATTATCCAAT 12420
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 77508
|| || || ||||| ||| | | | ||| | || || |||||||| ||
Sbjct 12419 TCCATCGTTGTAACGCCGGGAAACAAACCTCGGATTACCTTCATGGCAAT 12370
>seq13914
Length=11729
Score = 131 bits (144), Expect = 2e-25
Identities = 166/226 (73%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || || || || || | || |||||||||||||| | || ||||| |
Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
|| ||||||||||||||| |||| ||||||| ||| ||||| ||| |||| || ||
Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317
Query 47010 AGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068
||| ||||| ||||| || || |||||| ||||| |||||||| || || || ||
Sbjct 8318 -GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAA 8376
Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114
| || | || || |||| ||||||| | ||| || ||| |||
Sbjct 8377 TGAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422
Score = 127 bits (140), Expect = 3e-24
Identities = 164/226 (73%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||| ||||| |||||||| || || || || ||||||||||| || | ||||
Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||||||||| || || ||| |||||||||||| || ||||| ||||| || || |
Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005
Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCACCTTTGAGCCCAATCAG 46828
| | | ||| ||||| || | || | || || |||||| | ||||| ||||
Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065
Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874
| ||| |||| ||||| ||||| ||||| || ||||| || || ||
Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAGGAA 8111
Score = 95.1 bits (104), Expect = 2e-14
Identities = 134/185 (72%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517
|| |||||| || || ||||| |||||||||||||| | ||||| |||||||| || |
Sbjct 7615 CAATCTATCAGCTACAAATTCAATATACGTTTTCATTAATTCACTGTTCATTCCAATCAT 7674
Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CG-ATATT 46575
|| || | ||| || || | ||| ||||||||||| | || || || || ||| |
Sbjct 7675 CGATACGGGCAAAGCATCAGTCAAAAATTCTTGTTCAATGATAACGGCGTCACGAATAAT 7734
Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635
||| || | | ||| |||| ||| || | ||||||||| ||||| || || |||
Sbjct 7735 TTCG--GTGATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTGAACATCAAGCAAGCA 7792
Query 46636 AAATC 46640
|||||
Sbjct 7793 AAATC 7797
>seq19381
Length=19756
Score = 120 bits (132), Expect = 4e-22
Identities = 222/326 (68%), Gaps = 0/326 (0%)
Strand=Plus/Minus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|| ||||| || || || ||| ||| || ||||||| | | ||||||||||| |
Sbjct 9237 TCGAATTCTTCACCGTAACAGTCAAACAATCCGGGACATTGACTGGGACACATCAAACTC 9178
Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639
|| | |||||| | |||| | |||| || || || ||||| | || ||||
Sbjct 9177 CATTTTTCATCTTTTTCGACCCTTCTCATGAATTCGTCGGGGATCCACATTGCGTAAAAT 9118
Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699
| ||| | | | | ||||| || || | ||| ||| || |||| || || | |
Sbjct 9117 AAATCCCTAGCGCGAGACTCTTCTTTACCAGAATTTTTTCGCAGCTCTAAAAATTCAAAA 9058
Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759
||||| | |||||| ||||| | || || || | | ||||||||| ||| || |||||
Sbjct 9057 ATATCCGCATGCCAAGGTTCCAAGTAAATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCT 8998
Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819
|| || | |||||||| |||||||| || || | | ||| ||||| | || || |||
Sbjct 8997 TGGTCCACGTATCTGGCTGTGTTATTGTATACGCGAAGCATCGGAATTAGACCATTTGAT 8938
Query 76820 GTACCATTTGTTCCAGAAATATAACT 76845
|| |||||||||| ||||| ||
Sbjct 8937 ACGCCGTTTGTTCCAGCGATATAGCT 8912
Score = 111 bits (122), Expect = 2e-19
Identities = 136/184 (74%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAG--AAAGTAGATTGTATG 77057
||||| || || |||||||| |||||||| || || |||||| | | || ||| || |
Sbjct 8692 GCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATAGG 8635
Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117
|||||||||| | || ||||| ||||| || || || || ||||||||||| |
Sbjct 8634 TTTCAATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACATGT 8575
Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177
|||| || ||||| ||| | ||| || |||||||| | || |||||||||| ||| |
Sbjct 8574 GCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAGTCT 8515
Query 77178 TAAA 77181
|||
Sbjct 8514 GAAA 8511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712218025691520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |