Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7792 145 1e-29 seq59517 140 5e-28 seq13914 131 2e-25 seq19381 120 4e-22 >seq7792 Length=27931 Score = 145 bits (160), Expect = 1e-29 Identities = 162/214 (76%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 46666 ATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATA 46725 |||||||||||| || || | ||||||||||| || |||||||| ||||||||||| Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248 Query 46726 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCT 46785 || || ||| ||| |||||||| |||||||| || || || || || | | || ||| Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308 Query 46786 CCGTAACTGGCATCATTATGA---ATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTA 46840 || || | |||| |||| | ||||| ||| | ||||| || || || ||||| | Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCA--TTTCAACGCCCAGTCTGCTTTCTTCTTAA 19366 Query 46841 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||||||||||||||| |||||||| || || || Sbjct 19367 CACAAGGCATTGTTTCAATAGCATTGAACAGGAA 19400 Score = 116 bits (128), Expect = 5e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| || || ||||| ||||| || | ||| |||||||||||||||| || || || | Sbjct 19485 ATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGT 19544 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 |||||||||||||| || |||| ||||| | || || || ||| | | || || || Sbjct 19545 GATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTC 19604 Query 47010 AGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 ||| ||||| |||||||| || || ||| || || |||||||| | || || || Sbjct 19605 -GACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAA 19663 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 | || | || || |||| ||||||| | |||||| ||| ||| Sbjct 19664 TGAACTTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709 Score = 104 bits (114), Expect = 3e-17 Identities = 136/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || |||||| || || ||||| || || || ||||| | ||| | ||||||||| || | Sbjct 18911 CAATCTATCAGCTACAAATTCAATGTAAGTCTTCATTAATTCGCTATTCATTCCAATCAT 18970 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGA-TATT 46575 || |||| |||||| || | ||| |||||||| || | ||||| || ||| || | Sbjct 18971 CGATACGGGTAAAGCCTCTGTCAAAAATTCTTGTTCGATTGCAACAGCGTCACGAATAAT 19030 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 ||| || | | ||| |||||||| || ||||||||||| |||||||| || ||| Sbjct 19031 TTCG--GTAATTTCTTCAACACTTGGTTTTTGAATCAAATGTTTGAACATTAAGCAGGCA 19088 Query 46636 AAATC 46640 ||||| Sbjct 19089 AAATC 19093 >seq59517 Length=19559 Score = 140 bits (154), Expect = 5e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||||||||| |||| || ||| || || || ||||| ||||| | |||| Sbjct 14726 TGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGAT 14667 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||| |||||||||||||| ||||| || |||||||| || | | || | | Sbjct 14666 TCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAA 14607 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 ||||| | || | | | | ||||| ||||||| || |||||||||| | ||| ||| Sbjct 14606 TTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATCAGAT 14547 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 || || | ||| | |||||| || | ||| Sbjct 14546 GGCTGGACGTTCCACATATCGTACTGCAAAAT 14515 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 ||||| || || |||||||| || | || || | | || || |||||||| |||| Sbjct 13007 GTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTTTCAATCGCTGCG 12948 Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131 || ||||| ||||||||||||||| || |||||||||||||| || || |||||| Sbjct 12947 TCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGTTGTGGGCGTTCT 12888 Query 77132 ACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||| || ||||||||||| || || |||||||||||||| Sbjct 12887 ACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844 Score = 86.0 bits (94), Expect = 9e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| |||||||| ||||| || || | ||| || || || || | ||| |||| | Sbjct 12539 CTAAAAAGTTTTTTAGTTTCTTTATGCAAATTGGAAACAGCAATACGAGCGGCTAACACA 12480 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 || |||||||||||| | ||||| || ||| || |||| || | | | |||| ||| Sbjct 12479 GCGTAGTCAGGATGTCGAGTAGTCATGGAGGCAGCAGTTTCGGCGGAGAGATTATCCAAT 12420 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 77508 || || || ||||| ||| | | | ||| | || || |||||||| || Sbjct 12419 TCCATCGTTGTAACGCCGGGAAACAAACCTCGGATTACCTTCATGGCAAT 12370 >seq13914 Length=11729 Score = 131 bits (144), Expect = 2e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || || | || |||||||||||||| | || ||||| | Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || ||||||||||||||| |||| ||||||| ||| ||||| ||| |||| || || Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317 Query 47010 AGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 ||| ||||| ||||| || || |||||| ||||| |||||||| || || || || Sbjct 8318 -GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAA 8376 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 | || | || || |||| ||||||| | ||| || ||| ||| Sbjct 8377 TGAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422 Score = 127 bits (140), Expect = 3e-24 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||| ||||| |||||||| || || || || ||||||||||| || | |||| Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||||||||| || || ||| |||||||||||| || ||||| ||||| || || | Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005 Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCACCTTTGAGCCCAATCAG 46828 | | | ||| ||||| || | || | || || |||||| | ||||| |||| Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 | ||| |||| ||||| ||||| ||||| || ||||| || || || Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAGGAA 8111 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || |||||| || || ||||| |||||||||||||| | ||||| |||||||| || | Sbjct 7615 CAATCTATCAGCTACAAATTCAATATACGTTTTCATTAATTCACTGTTCATTCCAATCAT 7674 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CG-ATATT 46575 || || | ||| || || | ||| ||||||||||| | || || || || ||| | Sbjct 7675 CGATACGGGCAAAGCATCAGTCAAAAATTCTTGTTCAATGATAACGGCGTCACGAATAAT 7734 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 ||| || | | ||| |||| ||| || | ||||||||| ||||| || || ||| Sbjct 7735 TTCG--GTGATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTGAACATCAAGCAAGCA 7792 Query 46636 AAATC 46640 ||||| Sbjct 7793 AAATC 7797 >seq19381 Length=19756 Score = 120 bits (132), Expect = 4e-22 Identities = 222/326 (68%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 || ||||| || || || ||| ||| || ||||||| | | ||||||||||| | Sbjct 9237 TCGAATTCTTCACCGTAACAGTCAAACAATCCGGGACATTGACTGGGACACATCAAACTC 9178 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || | |||||| | |||| | |||| || || || ||||| | || |||| Sbjct 9177 CATTTTTCATCTTTTTCGACCCTTCTCATGAATTCGTCGGGGATCCACATTGCGTAAAAT 9118 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | ||| | | | | ||||| || || | ||| ||| || |||| || || | | Sbjct 9117 AAATCCCTAGCGCGAGACTCTTCTTTACCAGAATTTTTTCGCAGCTCTAAAAATTCAAAA 9058 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||| | |||||| ||||| | || || || | | ||||||||| ||| || ||||| Sbjct 9057 ATATCCGCATGCCAAGGTTCCAAGTAAATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCT 8998 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | |||||||| |||||||| || || | | ||| ||||| | || || ||| Sbjct 8997 TGGTCCACGTATCTGGCTGTGTTATTGTATACGCGAAGCATCGGAATTAGACCATTTGAT 8938 Query 76820 GTACCATTTGTTCCAGAAATATAACT 76845 || |||||||||| ||||| || Sbjct 8937 ACGCCGTTTGTTCCAGCGATATAGCT 8912 Score = 111 bits (122), Expect = 2e-19 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAG--AAAGTAGATTGTATG 77057 ||||| || || |||||||| |||||||| || || |||||| | | || ||| || | Sbjct 8692 GCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATAGG 8635 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 |||||||||| | || ||||| ||||| || || || || ||||||||||| | Sbjct 8634 TTTCAATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACATGT 8575 Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177 |||| || ||||| ||| | ||| || |||||||| | || |||||||||| ||| | Sbjct 8574 GCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAGTCT 8515 Query 77178 TAAA 77181 ||| Sbjct 8514 GAAA 8511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712218025691520