Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq19165 780 0.0 seq9614 122 6e-23 >seq19165 Length=1007 Score = 780 bits (864), Expect = 0.0 Identities = 434/435 (99%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 82690 ATATCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAGATACTCACCTGC 82749 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 ATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAGATACTCACCTGC 696 Query 82750 ATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGATGTCGATAGTTAC 82809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 ATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGATGTCGATAGTTAC 636 Query 82810 TAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACCAGTGCAGTGCTT 82869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 635 TAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACCAGTGCAGTGCTT 576 Query 82870 GATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCCGTCTTCACGGAC 82929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 GATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCCGTCTTCACGGAC 516 Query 82930 TTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATA 82989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 TTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATA 456 Query 82990 CTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTAC 83049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 CTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTAC 396 Query 83050 TGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTC 83109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 TGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTC 336 Query 83110 CCGTTCATCCAGCAG 83124 ||||||||||||||| Sbjct 335 CCGTTCATCCAGCAG 321 >seq9614 Length=652 Score = 122 bits (134), Expect = 6e-23 Identities = 206/292 (71%), Gaps = 10/292 (3%) Strand=Plus/Plus Query 88241 AAGAACCATTGTCCGCCATTCATTAGCCAGTTATTCACGTTGCCA---TCTGGACTTAAC 88297 |||||||| |||||||| | ||||||| ||| ||||| ||| |||| ||| Sbjct 7 AAGAACCAGCCACCGCCATTAAGCAGCCAGTGATTAACGTTTCCACGCTCTGA---TAAG 63 Query 88298 GCATCAATCATCAGCCGCTCATGGTTCCCCATCACTGCCCTGAACCA-GGGCATCTGCAA 88356 |||||||||||| |||||||||| || || || |||||||| ||| || || | Sbjct 64 CCATCAATCATCATTTGCTCATGGTTTCCACGTACAGCTCTGAACCAGGGGAATGTG-AT 122 Query 88357 TAGTTCCAGACATTCGACATTTTCAGTACCGCGATCGATAAGGTCGCCGACCGATATCAG 88416 || |||||| ||||| || || || | ||| ||||| | | ||||| ||||| || || Sbjct 123 TAATTCCAGGCATTCAACGTTCTCTGCACCACGATCAACCAAATCGCCCACCGAGATAAG 182 Query 88417 TAAATCCTGCGCCGGGTCAAAATCCACACG-ATGGAGTTCGGACATCAGTCTGGTGTAGC 88475 | || | ||| |||||| || || |||| | |||||| | ||||||| Sbjct 183 CAGGTCTTTTTTGTTGTC-GAATCCAATCGTATCCAGTTTGTTCATCAGGTTCGTGTAGC 241 Query 88476 AACCATGCAGATCACCAACAACCCAGACATTCCTGTATTTGGTACCGTCGAT 88527 | || |||||||| ||||| ||||| | ||| | ||||||| | || || || Sbjct 242 ATCCGTGCAGATCGCCAACTACCCAAATATTTCGGTATTTGCTGCCATCAAT 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330575016606076