Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq52934 134 3e-26 seq28572 132 1e-25 seq63578 118 2e-21 >seq52934 Length=6696 Score = 134 bits (148), Expect = 3e-26 Identities = 146/192 (76%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAA 151972 |||||||||| |||||||||| || |||||| |||||||| | ||||| |||||||| Sbjct 3966 CTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTT--CCGGCGAA 4023 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| | | |||||||| | | ||| ||||| || ||||||||||| ||| ||| | Sbjct 4024 GATCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATT 4083 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | || ||| || ||||| ||||| || ||||| ||||| || || ||||| Sbjct 4084 TTCAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCAC 4143 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 4144 GAAGATCTGCAT 4155 >seq28572 Length=14732 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | ||| | |||||| |||||||||||||| || || | | ||| Sbjct 2979 CTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTT 3038 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || ||| |||||||| || || | |||||||||| | ||| ||| Sbjct 3039 CTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCT 3098 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||||||| ||||| | || | |||| | ||| ||||| ||| Sbjct 3099 TCTTTATCCTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGA 3158 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| || | || || ||||||| |||||| Sbjct 3159 GTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 109 bits (120), Expect = 1e-18 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||| | || || |||||||||||||||||||||| | ||||| Sbjct 2525 GAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCG 2584 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || ||| |||||||| || | | || || || | | ||||| || Sbjct 2585 GCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTC 2644 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 ||| || |||||||| |||||| | || | | |||| ||| ||||||||| || Sbjct 2645 CTTATCCTGAATTTTAGCCTTGACATTTTCGATGGTGTC---ACTGGGCTCTACTTCGAG 2701 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || ||||| || || | || || ||||| | |||||| Sbjct 2702 AGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||| || || |||||||||||||| || || | | |||||| |||||| Sbjct 2760 AGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCT 2819 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| || | || || || | | ||||| || || ||| Sbjct 2820 TCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCT 2879 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||||| | || | |||| | ||| ||||| || ||||| ||| Sbjct 2880 TGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTT 2939 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||| ||||||| |||||| Sbjct 2940 TTACCAGTCAAGGTCTTGACGAAGATTTGCATT 2972 Score = 107 bits (118), Expect = 4e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| || | ||| | || || |||||||||||||| || || | | |||||| || Sbjct 2300 TCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCC 2359 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || || |||||||| | ||||| || | | ||||| ||||| Sbjct 2360 ATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTT 2419 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| |||||| | || | |||| | ||| || || || || || Sbjct 2420 ATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGAT 2479 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||| || || | ||||| ||||| | |||||| Sbjct 2480 AGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATT 2516 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | ||| || || ||||| || |||||||||| | |||| |||||| Sbjct 2076 AGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCT 2135 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| || || | | || || || | | ||||||||||| ||| Sbjct 2136 TCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCT 2195 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||| | || | | |||| ||| ||||||||| ||||| || Sbjct 2196 TGGATTTTAGCCTTGACGTTTTCGATGGTGTC---ACTGGGCTCTACTTCGAGAGTGATG 2252 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || || || ||||||| ||||| Sbjct 2253 GTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| || || |||||||| |||||||||| | |||| || ||| Sbjct 3216 AGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCCGTCT 3275 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | || || || | | || |||||||| | Sbjct 3276 TCGAGTTGCTTT--CCAGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTTAT 3333 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAA 152067 |||||||||| ||||| | || | | || |||| || ||||| || || | Sbjct 3334 CTTGAATTTTCGCCTTGACGTTTTCGATCGTATC---ACTCGGTTCAACTTCGAGGGTGA 3390 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || || | || || ||||||| ||||||||| Sbjct 3391 TGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTT 3430 >seq63578 Length=26733 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || ||||||||||| || |||||||| ||| ||||| | |||||||||| Sbjct 12073 ATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTCTAATTG 12132 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| |||||||| || | || |||||||| | | ||| ||||| || ||||| ||||| Sbjct 12133 TTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGGATTTT 12192 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | ||| ||| | || | |||| || || ||||| | || |||||||| || || Sbjct 12193 TGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACTTCTAACGTGATAGTTTTTCCAGT 12252 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || ||||| | |||||| Sbjct 12253 GAGCGTTTTAACGAAAATTTGCATT 12277 Score = 111 bits (122), Expect = 4e-19 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 |||||| || ||||| || || || || |||||| ||| || | |||||||| | | Sbjct 11389 ATGAAGGGTGGACTCCTTCTGAATATTATAATCGCTTAACGTGCGGCCATCTTCCAATTG 11448 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| || ||||| || | ||||||||||| | || ||| ||||| || ||||||||| Sbjct 11449 CTTT--CCAGCGAAAATCAATCTCTGCTGGTCAGGCGGGATACCTTCTTTATCTTGAATT 11506 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || ||| || |||| | | | || || || ||||| | |||||||| ||||| Sbjct 11507 TTAGCTTTCACGTTCTCGATGGTATCGGACGGTTCGACTTCCAAGGTAATAGTCTTGCCG 11566 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATT 152105 || | ||| |||||||| | |||||| Sbjct 11567 GTTAAAGTTTTCACGAAAATTTGCATT 11593 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||| || ||||||||||| || |||||| || || | || ||||| | Sbjct 12301 ATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTCAAGGTACGACCGTCTTCCAATTG 12360 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| |||||||| || | ||||||||||| | | ||| ||||| || ||||||||||| Sbjct 12361 TTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGGATGCCTTCTTTGTCTTGAATTTT 12420 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| || | || | | || || || ||||| | || |||||||| || || Sbjct 12421 GGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACTTCCAAGGTGATAGTTTTTCCGGT 12480 Query 152081 GAGAGT 152086 || || Sbjct 12481 TAGCGT 12486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152632427315006