Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq28572 113 3e-20 seq63578 102 6e-17 seq52934 89.7 4e-13 >seq28572 Length=14732 Score = 113 bits (124), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGC 44177 |||| |||||||| || ||||| ||| || ||||| |||||||| | ||||| | Sbjct 1614 AGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTT--C 1671 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 | || || |||||||| ||||| || || ||||| |||||||| | ||| | |||| Sbjct 1672 TACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTT 1731 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 | || || ||||| ||| | || | ||||||||| | ||| || || | | Sbjct 1732 CTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGAG 1791 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || || | |||||| |||||||||||||| Sbjct 1792 TAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| || | ||| || || | || |||||||| || ||||| Sbjct 2054 TTGCATACCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTA 2113 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| ||| || | || || || || || |||||||| || ||||| || ||||| Sbjct 2114 ATCGGAGAGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATC 2173 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| || || || ||| | || | |||||||| || Sbjct 2174 TGGGGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGG 2233 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || || || ||||| ||||| || |||||||||||||| Sbjct 2234 CTCTACTTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 >seq63578 Length=26733 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | | ||| | |||| |||||| ||| || || || ||||| || Sbjct 11587 TTGCATTCCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATA 11646 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || || | || |||| ||| || |||||||||||||| || ||||| || Sbjct 11647 ATCACTCAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTC 11706 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||| || ||| || || || | || | ||||| |||| | Sbjct 11707 TGGTGGTATGCCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTATCGGACGG 11766 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || || || ||||| ||||| || || ||||| |||||||| Sbjct 11767 TTCCACCTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || |||| || || ||| ||||||||||| ||||||||| | ||| |||| Sbjct 11837 AAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCGTCT 11896 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| || || ||||| || || || |||||||| || | || | |||||| || || Sbjct 11897 TCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTGTCT 11956 Query 44246 GTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| |||| || ||| | || || |||| | || || |||| ||| || || Sbjct 11957 TGAATCTT-GGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGATAGT 12015 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || || ||||| |||||||| Sbjct 12016 TTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 >seq52934 Length=6696 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 44150 TTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||| |||||||||| ||||| | | || |||| ||||| ||||| |||| Sbjct 3968 TTTTGGATATTGTAATCGGATAGAGTT--CTACCATCTTCCAATTGCTTTCCGGCGAAGA 4025 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||||||| ||||| || | ||| | |||||| || || || || || | || Sbjct 4026 TCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 4085 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || || || | | ||| || || | || ||||| || ||||| ||||| ||||||| Sbjct 4086 CAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGA 4145 Query 44328 AGATTTGCAT 44337 |||| ||||| Sbjct 4146 AGATCTGCAT 4155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359637715830162