Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq53791 100 4e-16 seq54470 95.1 2e-14 >seq53791 Length=16609 Score = 100 bits (110), Expect = 4e-16 Identities = 132/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 ||||||||| | | ||| ||||| ||||| || ||||| |||| |||| || |||||| Sbjct 5944 AAACAATCGACGAATGTTGGCTTCAGATTCTCCAACATACTTGTCCAATATTTGAGGACC 6003 Query 156224 GTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATG 156282 ||| || ||||| ||| | ||| || | ||| | || |||||||| |||| Sbjct 6004 GTTTACAATTTTTGGTTCTCGAGCATTCAACATTTTGC-CAATTTGACGAGCCATCAATG 6062 Query 156283 TTTTACC-GCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTA 156339 ||||||| | |||| ||||||||||| ||||||| || |||| || ||||| |||| Sbjct 6063 TTTTACCAGTACCC-GGAGGTCCGTACAACAATATACCCTTTACGTGCTTACATCCTA 6119 >seq54470 Length=54847 Score = 95.1 bits (104), Expect = 2e-14 Identities = 230/340 (68%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 50474 AGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAA 50533 ||| ||| | || || |||||||| || ||||||||||| || ||||| |||| | | Sbjct 48714 AGGCGATCTCGGTCCAGTTTACGGATTCCAATGGAGACACTTCGGAGCTGAGTACAAAGA 48655 Query 50534 T-TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 | ||| ||| ||||| ||||| | |||||||||||||| | || || Sbjct 48654 TATGC-ACGCCGATTACTCCAACAAAGGCATCGATCAACTGCAAAATGTCATTGATACCA 48596 Query 50593 TGAAAACAAACCCCGACGATCGGCGTAT--TTTAATGACCGCCTGGAATCCAACCGATAT 50650 | |||| |||||||||||| | | || ||| ||| ||| |||||||| ||| | Sbjct 48595 TTAAAAATAACCCCGACGATAGAAGAATAATTTTATG--CGCTTGGAATCCGTTAGATTT 48538 Query 50651 AGATCAAACCGTTTTACCTCCGTGTCA-TGTTTTATGTCAATTTTATGCCACAGACAATG 50709 | | | | ||||||| ||||| ||||| || || ||||| || | |||| Sbjct 48537 ACCCAAGATGGCCCTACCTCCTTGTCACTGTTTAGTG-CAGTTTTACGCT---GTTAATG 48482 Query 50710 TT---TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCA 50766 ||||| |||||| |||||| | || || |||||||||||||| || ||||| | Sbjct 48481 GCGAATTATCGTGTCAAATGTATCAACGTTCTGCCGATATGGGTTTAGGAGTACCTTTTA 48422 Query 50767 ACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | | || |||| | || | || || ||||||| || Sbjct 48421 ATATCGCCAGTTACTCCCTACTCACTTACATGATCGCACA 48382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666404906162160