Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_033423.1
Length=208501
Score E
Sequences producing significant alignments: (Bits) Value
seq53791 100 4e-16
seq54470 95.1 2e-14
>seq53791
Length=16609
Score = 100 bits (110), Expect = 4e-16
Identities = 132/178 (74%), Gaps = 4/178 (2%)
Strand=Plus/Plus
Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223
||||||||| | | ||| ||||| ||||| || ||||| |||| |||| || ||||||
Sbjct 5944 AAACAATCGACGAATGTTGGCTTCAGATTCTCCAACATACTTGTCCAATATTTGAGGACC 6003
Query 156224 GTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATG 156282
||| || ||||| ||| | ||| || | ||| | || |||||||| ||||
Sbjct 6004 GTTTACAATTTTTGGTTCTCGAGCATTCAACATTTTGC-CAATTTGACGAGCCATCAATG 6062
Query 156283 TTTTACC-GCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTA 156339
||||||| | |||| ||||||||||| ||||||| || |||| || ||||| ||||
Sbjct 6063 TTTTACCAGTACCC-GGAGGTCCGTACAACAATATACCCTTTACGTGCTTACATCCTA 6119
>seq54470
Length=54847
Score = 95.1 bits (104), Expect = 2e-14
Identities = 230/340 (68%), Gaps = 14/340 (4%)
Strand=Plus/Minus
Query 50474 AGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAA 50533
||| ||| | || || |||||||| || ||||||||||| || ||||| |||| | |
Sbjct 48714 AGGCGATCTCGGTCCAGTTTACGGATTCCAATGGAGACACTTCGGAGCTGAGTACAAAGA 48655
Query 50534 T-TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592
| ||| ||| ||||| ||||| | |||||||||||||| | || ||
Sbjct 48654 TATGC-ACGCCGATTACTCCAACAAAGGCATCGATCAACTGCAAAATGTCATTGATACCA 48596
Query 50593 TGAAAACAAACCCCGACGATCGGCGTAT--TTTAATGACCGCCTGGAATCCAACCGATAT 50650
| |||| |||||||||||| | | || ||| ||| ||| |||||||| ||| |
Sbjct 48595 TTAAAAATAACCCCGACGATAGAAGAATAATTTTATG--CGCTTGGAATCCGTTAGATTT 48538
Query 50651 AGATCAAACCGTTTTACCTCCGTGTCA-TGTTTTATGTCAATTTTATGCCACAGACAATG 50709
| | | | ||||||| ||||| ||||| || || ||||| || | ||||
Sbjct 48537 ACCCAAGATGGCCCTACCTCCTTGTCACTGTTTAGTG-CAGTTTTACGCT---GTTAATG 48482
Query 50710 TT---TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCA 50766
||||| |||||| |||||| | || || |||||||||||||| || ||||| |
Sbjct 48481 GCGAATTATCGTGTCAAATGTATCAACGTTCTGCCGATATGGGTTTAGGAGTACCTTTTA 48422
Query 50767 ACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806
| | || |||| | || | || || ||||||| ||
Sbjct 48421 ATATCGCCAGTTACTCCCTACTCACTTACATGATCGCACA 48382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 666404906162160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |