Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq28572 174 4e-38 seq63578 168 2e-36 seq52934 152 1e-31 seq46443 111 4e-19 >seq28572 Length=14732 Score = 174 bits (192), Expect = 4e-38 Identities = 170/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| ||||| || || | || || |||||||| || ||||| || ||| ||| Sbjct 1828 CAAATCTTCGTTAAGACCTTGACCGGTAAAACGATTACTCTCGAAGTCGAACCTAGC--- 1772 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| |||||||| ||||| || |||||||||||||||||||| || ||| Sbjct 1771 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAG 1712 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| | || ||||||||||| ||||| |||||||| || |||||| | ||||| || Sbjct 1711 CAACGTTTAATTTTCGCCGGAAAGCAGCTTGAAGATGGTAGAACTCTTTCGGATTACAAT 1652 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| ||||| || || |||||| | || ||| |||| Sbjct 1651 ATCCAGAAAGAGTCGACGCTGCATTTGGTGTTGCGACT 1614 Score = 172 bits (190), Expect = 1e-37 Identities = 172/221 (78%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| | || || ||||| ||||| ||||| || || || || Sbjct 3196 CAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGA--GCCTAGCG 3139 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || |||||||| ||| |||||||| |||||||| |||||||||||||||| Sbjct 3138 ACACGATTGAAAACGTCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCAGC 3079 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || || |||||||| ||||| ||||||||||| || || ||| | || |||||| Sbjct 3078 AACGTCTGATTTTCGCCGGTAAACAACTCGAAGATGGTAGAACACTTTCGGACTATAACA 3019 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||| || | ||| | ||| | | |||||| Sbjct 3018 TCCAAAAAGAATCTACTTTACATTTGGTTCTCCGTCTCAGA 2978 Score = 165 bits (182), Expect = 2e-35 Identities = 163/209 (78%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||||||||| || || | || || ||||| ||||| |||||||| || || || Sbjct 2512 CAAATTTTCGTCAAGACCTTAACTGGTAAAACTATCACACTCGAGGTCGA--GCCTAGTG 2455 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||| || ||||| || ||||| || || || ||||| || || || |||| Sbjct 2454 ACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCCCCTGATCAGC 2395 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| |||||||| || || ||||| |||||||||||||| |||||| | || |||||| Sbjct 2394 AACGTCTTATCTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCGGACTATAACA 2335 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||||| ||| ||||| | ||| Sbjct 2334 TCCAAAAAGAATCGACATTGCATTTAGTT 2306 Score = 158 bits (174), Expect = 3e-33 Identities = 158/203 (78%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||||||||| ||||| | ||||| ||||| ||||||||||| || || || || Sbjct 2056 CAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGA--GCCTAGTG 1999 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||| || ||||| || || || || || || ||||| ||||| ||||||| Sbjct 1998 ACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAGC 1939 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || || |||||||||||||| |||||||| || || ||||| | |||||||| Sbjct 1938 AACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAATA 1879 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 | ||||||||||| || || ||| Sbjct 1878 TTCAAAAAGAATCGACTCTTCAT 1856 Score = 150 bits (166), Expect = 4e-31 Identities = 160/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || |||||||| ||||| | || || ||||| ||||| ||||| || || || ||| Sbjct 2740 CAGATTTTCGTCAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTAGA--GCCCAGTG 2683 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || ||||| || |||||||| || || ||||| || || || || | Sbjct 2682 ACACCATCGAAAATGTCAAGGCTAAAATTCAGGATAAGGAGGGAATTCCCCCTGATCAAC 2623 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || |||||||| ||||| |||||||| || | |||||| ||||||| ||| Sbjct 2622 AACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGATTACAACA 2563 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||||| ||| | ||| | ||| Sbjct 2562 TCCAAAAAGAATCGACATTACATTTGGTT 2534 Score = 140 bits (154), Expect = 8e-28 Identities = 154/203 (76%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || |||||||| || ||||| || || || || Sbjct 2968 CAAATCTTCGTCAAGACCTTGACTGGTAAAACGATTACACTCGAAGTTGA--GCCTAGCG 2911 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || |||||||| || || || || ||||| ||||| || || || || | Sbjct 2910 ACACTATTGAAAACGTCAAGGCCAAAATACAAGATAAAGAGGGAATTCCACCCGATCAAC 2851 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || |||||||| || ||||| |||||||||||||| ||||| | || |||||| Sbjct 2850 AACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGAAGAACTCTCTCTGACTATAACA 2791 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 ||||||||||||| || || ||| Sbjct 2790 TCCAAAAAGAATCGACCCTTCAT 2768 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| ||||| || || || ||||| ||||| ||||| || || || ||| Sbjct 2284 CAAATCTTCGTTAAAACCCTAACGGGTAAAACCATCACTCTCGAAGTAGA--GCCCAGTG 2227 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| |||||||| || || || || || |||||||| || || || || | Sbjct 2226 ACACCATCGAAAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCCCCAGATCAAC 2167 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || || ||||| ||||| ||||||||||| | || || ||||||| || Sbjct 2166 AACGTTTAATTTTTGCCGGCAAACAACTCGAAGATGGCCGAACCCTCTCCGATTACAATA 2107 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| |||||||| | ||||| || Sbjct 2106 TTCAAAAGGAATCAACTTTACATCTCGT 2079 Score = 131 bits (144), Expect = 4e-25 Identities = 159/216 (74%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| ||||| | || || ||||| ||||||||||| || ||| Sbjct 3430 AAAATGC---AGATCTTCGTAAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTTGAA 3374 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || ||||| |||||||| || ||||| || || ||||| || ||||| Sbjct 3373 CCGAGTGATACGATCGAAAACGTCAAGGCGAAAATTCAAGATAAGGAAGGTATTCCTCCT 3314 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| || |||||||| ||||| || |||||||| || | || ||| ||||| Sbjct 3313 GATCAACAACGTCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGAACGCTTTCCGAT 3254 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||||| ||||| || | ||| | ||| Sbjct 3253 TACAATATCCAAAAGGAATCGACTTTACATTTGGTT 3218 >seq63578 Length=26733 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| |||||||| || ||| | ||||||||| || || Sbjct 11817 CAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCCGAT 11758 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| || |||||||| |||||||| || || || ||||||||| Sbjct 11757 ACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAGCAA 11698 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||| |||||| | |||||||| | ||||| ||||||||| | Sbjct 11697 CGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAACATT 11638 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| || || || |||| Sbjct 11637 CAGAAAGAATCCACTCTTCA-CTTG 11614 Score = 149 bits (164), Expect = 2e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| |||||||| ||||| | || || ||| || ||| Sbjct 12273 CAAATTTTCGTTAAAACGCTCACTGGAAAAACTATCACGTTAGAAGTCGAACCATCTGAC 12214 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||| || || || |||||||| ||||| || ||||||||| Sbjct 12213 ACAATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAGCAA 12154 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| ||||| | |||||||| | ||| | ||| || ||| | Sbjct 12153 AGATTAATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTGAGCGACTACAACATT 12094 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||| || || |||||| | |||||| Sbjct 12093 CAGAAAGAGTCTACGCTGCATTTAGTTTTG 12064 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||||| || |||||||| || || | || || ||| || || Sbjct 12729 CAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCATCCGAT 12670 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| |||||||| || |||||||||||||| || ||||||||| Sbjct 12669 ACGATCGAAAACGTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGACCAGCAA 12610 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| | || | ||| || || | Sbjct 12609 CGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTACAATATT 12550 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| || || ||| Sbjct 12549 CAAAAAGAATCGACGCTTCAT 12529 Score = 136 bits (150), Expect = 1e-26 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAA--ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981 |||||||| | ||| || || || |||||||| |||||| | || |||||| || | Sbjct 12501 CAAATTTT--TCAAATTACGCTAACCGGAAAAACTATCACCTTGGAAGTGGAACCGTCTG 12444 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || || ||||| ||| || ||||| ||||||||||| ||||| || ||||||| Sbjct 12443 ATACTATTGAAAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATCCCACCCGACCAGC 12384 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGC-CGATTATAAC 178100 | || | || |||||||| ||||| | ||||| || | || |||| ||||||||| Sbjct 12383 AGAGATTAATTTTCGCCGGTAAACAATTGGAAGACGGTCGTAC-CTTGAGCGATTATAAT 12325 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||||| || || ||| | ||||| Sbjct 12324 ATCCAAAAAGAATCCACTCTTCATTTAGTTTT 12293 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| || ||||| ||||| | || || || || || Sbjct 12045 CAAATTTTCGTAAAAACGCTCACCGGTAAAACTATCACGTTGGAAGTAGAGCCATCCGAT 11986 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| |||||||| ||||||||||| || || || |||||||| Sbjct 11985 ACAATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCCGACCAGCAG 11926 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| ||||| | ||||| || | || | |||||| || || Sbjct 11925 CGATTAATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACGTTAAGCGATTACAATATC 11866 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||| ||||| || || ||| | || || Sbjct 11865 CAAAAGGAATCCACCCTACATTTGGTCTT 11837 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||||||| | || || || || || ||| | || || ||| || || Sbjct 11589 CAAATTTTCGTGAAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTCCGAT 11530 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| || ||||| || |||||||| ||||| || |||||||| Sbjct 11529 ACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCTGACCAGCAG 11470 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| ||||| || | |||||||| | || | ||||||||| | Sbjct 11469 AGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGATTATAATATT 11410 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || ||| | |||||| Sbjct 11409 CAGAAGGAGTCCACCCTTCATTTGGTTTTG 11380 >seq52934 Length=6696 Score = 152 bits (168), Expect = 1e-31 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || ||||||||||| ||||| || ||| || || Sbjct 4152 CAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCGGAT 4093 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || |||||||| |||||||| ||||||||| Sbjct 4092 ACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAGCAA 4033 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || | |||||||| || ||||| ||||||| || || Sbjct 4032 CGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAATATC 3973 Query 178104 CAAAAAG 178110 ||||||| Sbjct 3972 CAAAAAG 3966 >seq46443 Length=17015 Score = 111 bits (122), Expect = 4e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| || ||||| ||||| ||||| | || || || || ||||| |||||||||||| | Sbjct 12820 AGGCATTCCTCCTGACCAACAACGTTTGATTTTTGCTGGTAAACAACTCGAAGATGGACG 12761 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || ||| ||||||||||| ||||||||||||| || |||||| | || |||||| | || Sbjct 12760 TACCCTTTCCGATTATAACATCCAAAAAGAATCTACTCTGCATTTAGTATTGAGATTGAG 12701 Query 178142 A 178142 | Sbjct 12700 A 12700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202491422316884