Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq63578 98.7 9e-16 seq28572 91.5 1e-13 >seq63578 Length=26733 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| |||||||| |||| ||| || ||| ||||| || || || || ||| Sbjct 11822 CCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTT 11881 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| || | || || |||||||| || | ||||| ||||| | ||| Sbjct 11882 AACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGA 11941 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || ||||| ||| | || |||| ||| | | || ||| | ||| || Sbjct 11942 ATACCTTCTTTGTCT-TGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTAC 12000 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || |||||||| || ||||| ||||||||||| ||||| Sbjct 12001 TTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 >seq28572 Length=14732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || || || ||||||||||| ||||| || | | || ||||| || ||||| ||||| Sbjct 2781 TCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCTTCGAGTTGTTTGCCAGCGAAG 2840 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || || ||||| || | |||| | ||| || || || |||| || | ||| Sbjct 2841 ATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCT-TGTATTTTGGCCTTGACGTT 2899 Query 41792 GACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || ||||||||| | ||| || || | || ||||||||||| |||| ||||| || Sbjct 2900 TTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTTTTACCAGTCAAGGTCTTGAC 2959 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 2960 GAAGATTTGCAT 2971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || || || ||||||||||| || || || | | || ||||| || || |||||||| Sbjct 3009 TCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAA 3068 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| || || ||||||| || | || || || ||| ||| ||||||| | ||| Sbjct 3069 ATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCC-TGAATTTTTGCCTTGACGTT 3127 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||||| | ||| || || | || || ||||| || || | || ||||| Sbjct 3128 TTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTAC 3187 Query 41851 GAAAATCTGCAT 41862 ||| |||||||| Sbjct 3188 GAAGATCTGCAT 3199 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| | || || || || ||||| || ||||| Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||| || || |||||||| || | || ||||| || | |||| Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| |||| || | || | | ||||| || | ||| || Sbjct 2637 ATTCCCTCCTTATCC-TGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || |||||||| || | || || |||||||||||||| Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| ||||| || || ||||||||||| || | || ||||| || |||||||| || Sbjct 2097 TCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAA 2156 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || | || ||||| || | ||||| | ||||| | | || |||| || | ||| Sbjct 2157 ATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTAT-CTTGGATTTTAGCCTTGACGTT 2215 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| || | ||| || || | || || ||||||||||| || || || || Sbjct 2216 TTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAAC 2275 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 2276 GAAGATTTGCAT 2287 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || ||||||| ||||||||| ||| ||||| || || || || || Sbjct 1604 GCCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGA 1663 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | | || || |||||||| |||||||| || | || || || || | || Sbjct 1664 AAGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGG 1723 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || ||||| ||| || ||| | || | | |||||||| | || | Sbjct 1724 GATTCCTTCTTTGTCTTGGATCTTAGCCTTGA-CGTTTTCGATGGTGTCGCTAGGTTCGA 1782 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || ||||||||||| |||| ||||| ||||| || ||||| Sbjct 1783 CTTCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461839465383200