Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq63578 98.7 9e-16
seq28572 91.5 1e-13
>seq63578
Length=26733
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| |||||||| |||| ||| || ||| ||||| || || || || |||
Sbjct 11822 CCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTT 11881
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| |||| || | || || |||||||| || | ||||| ||||| | |||
Sbjct 11882 AACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGA 11941
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || ||||| ||| | || |||| ||| | | || ||| | ||| ||
Sbjct 11942 ATACCTTCTTTGTCT-TGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTAC 12000
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| ||| || |||||||| || ||||| ||||||||||| |||||
Sbjct 12001 TTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048
>seq28572
Length=14732
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|| || || ||||||||||| ||||| || | | || ||||| || ||||| |||||
Sbjct 2781 TCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCTTCGAGTTGTTTGCCAGCGAAG 2840
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
|| || || ||||| || | |||| | ||| || || || |||| || | |||
Sbjct 2841 ATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCT-TGTATTTTGGCCTTGACGTT 2899
Query 41792 GACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| ||||||||| | ||| || || | || ||||||||||| |||| ||||| ||
Sbjct 2900 TTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTTTTACCAGTCAAGGTCTTGAC 2959
Query 41851 GAAAATCTGCAT 41862
||| || |||||
Sbjct 2960 GAAGATTTGCAT 2971
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|| || || ||||||||||| || || || | | || ||||| || || ||||||||
Sbjct 3009 TCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAA 3068
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
||||| || || ||||||| || | || || || ||| ||| ||||||| | |||
Sbjct 3069 ATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCC-TGAATTTTTGCCTTGACGTT 3127
Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
| | |||||||| | ||| || || | || || ||||| || || | || |||||
Sbjct 3128 TTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTAC 3187
Query 41851 GAAAATCTGCAT 41862
||| ||||||||
Sbjct 3188 GAAGATCTGCAT 3199
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| ||| | || || || || ||||| || |||||
Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||| || || |||||||| || | || ||||| || | ||||
Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| ||| |||| || | || | | ||||| || | ||| ||
Sbjct 2637 ATTCCCTCCTTATCC-TGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || |||||||| || | || || ||||||||||||||
Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
||||| ||||| || || ||||||||||| || | || ||||| || |||||||| ||
Sbjct 2097 TCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAA 2156
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
|| | || ||||| || | ||||| | ||||| | | || |||| || | |||
Sbjct 2157 ATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTAT-CTTGGATTTTAGCCTTGACGTT 2215
Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
| | ||||| || | ||| || || | || || ||||||||||| || || || ||
Sbjct 2216 TTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAAC 2275
Query 41851 GAAAATCTGCAT 41862
||| || |||||
Sbjct 2276 GAAGATTTGCAT 2287
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || ||||||| ||||||||| ||| ||||| || || || || ||
Sbjct 1604 GCCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGA 1663
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || | | || || |||||||| |||||||| || | || || || || | ||
Sbjct 1664 AAGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGG 1723
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | || ||||| ||| || ||| | || | | |||||||| | || |
Sbjct 1724 GATTCCTTCTTTGTCTTGGATCTTAGCCTTGA-CGTTTTCGATGGTGTCGCTAGGTTCGA 1782
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | || ||||||||||| |||| ||||| ||||| || |||||
Sbjct 1783 CTTCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461839465383200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |