Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_000929.1 Length=36717 Score E Sequences producing significant alignments: (Bits) Value seq9686 187 6e-43 >seq9686 Length=37809 Score = 187 bits (206), Expect = 6e-43 Identities = 395/582 (68%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 35056 ATGGCATGATT--GGCGCTTTTAAACAG-GAGATCCAGAGTGCTGATTGGCTATGTAAGG 35112 |||||||||| ||| ||||| || | || | ||| |||||||||||||||| | Sbjct 27123 ATGGCATGATCACGGC-CTTTTGAAGGGTGAAAACCAA--TGCTGATTGGCTATGTTCGC 27179 Query 35113 GTATCAACAAATGACCAGAATACAGACCTGCAACGAAACGCTCTTGTTTGTGCAGGATGT 35172 |||||||||||||||||||| || | | ||||| || || || | | ||||| ||| Sbjct 27180 GTATCAACAAATGACCAGAACACCGCATTACAACGGAATGCGCTGGAGAGCGCAGGTTGT 27239 Query 35173 GAACAAATATTTGAAGATAAATTAAGCGGAACAAGGACAGACCGACCGGGATTAAAACGC 35232 || | ||| ||||||||||| | || || | || | | ||||| || || | || || Sbjct 27240 GAGCTAATTTTTGAAGATAAGATCAGTGGCAAAACGTCTGACCGCCCAGGGCTTAAGCGT 27299 Query 35233 G-CTTTAAAGCGCCTTCAAAAAGGTGACACACTGGTTGTCTGGAAACTGGATCGCCTCGG 35291 | | | | || || |||| || || ||||| || ||||| |||| || || || Sbjct 27300 GTGCTCAGAACG-CTAGGGGAAGGAGATACGCTGGTGGTTTGGAAGTTGGACCGGCTGGG 27358 Query 35292 GCGAAGCATGAAACATTTGATTTCTCTCGTAGGGGAATTACGAGAGCGAGGGATTAATTT 35351 || |||||| |||| | | ||||| | ||| | || || |||||||||| || Sbjct 27359 ACGCAGCATGCGACATCTTGTCGTGCTCGTGGAAGAACTGCGTGATAGAGGGATTAACTT 27418 Query 35352 TCGCAGTCTTACTGACAGTATTGATACGTCATCTCCAATGGGGCGTTTTTTCTTCCACGT 35411 ||| || || || ||||| |||||||| | || |||||||| || || ||||| || Sbjct 27419 TCGGAGCCTGACAGACAGCATTGATACCAGTACGCCGATGGGGCGGTTCTTTTTCCATGT 27478 Query 35412 TATGGGTGCCCTGGCTGAAATGGAACGAGAACTAATTATCGAGCGAACGATGGCTGGACT 35471 ||||| || ||||| || ||||| ||||| || || |||| ||||| ||||| | Sbjct 27479 AATGGGCGCACTGGCCGAGATGGAGCGAGAGCTGATAGTCGAACGAACCCGCGCTGGTTT 27538 Query 35472 TGCTGCCGCCAGAAATAAAGGCCGTATTGGTGGGCGACCACCTAAACTAACCAAAGCGGA 35531 || || || | | || | ||||| || ||| || ||| | | |||| || Sbjct 27539 AGCAGCTGCACGCGCAGAGGGTAGGATTGGAGGCAGACGCCCAAAATATAGCGAAGCTGA 27598 Query 35532 ATGGGAGCAGGCCGGGCGTTTATTAGCACAAGGAATCCCCCGCAAGCAGGTTGCATTGAT 35591 |||| ||| || | || ||| | ||||| | |||||||| ||| | || Sbjct 27599 GTGGGCTCAGATGGGAAGGTTGATAGAAGGGGGAATGGATAGAAAGCAGGTGGCAATCAT 27658 Query 35592 CTACGATGTGGCCCTGTCAACTCTGTATAAAAAACACCCCGC 35633 ||| ||||| | | || |||||||| || ||| ||||| Sbjct 27659 CTATGATGTCGGGGTATCTACTCTGTACAAGAAATTTCCCGC 27700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117288295178542