Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5580 192 6e-44 >seq5580 Length=7482 Score = 192 bits (212), Expect = 6e-44 Identities = 503/758 (66%), Gaps = 12/758 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| |||| || || || || || || || ||||| |||| || || || | Sbjct 5333 TTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTT 5392 Query 16734 CCATGAAATCAAAAGGATTA--GTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 |||| || || ||||| || | | || |||| || || | |||||| | | Sbjct 5393 CCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGG-GAC-ATTGAAGTTCGACCAA 5450 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 | | || || || || || || || || ||| || || |||||||| || | | Sbjct 5451 GAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCAT 5510 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 |||||| | ||| || ||||| ||| |||||||||||| || || || || || Sbjct 5511 GGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGAT 5570 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTA--AGATGTTTAAACATCAGACATGCG 16969 | ||| || | || ||| || |||| | | |||||| |||| || || || Sbjct 5571 TTGCGTAACGCGAGCGACGC-CGG-GTTTGTTGACCAAATGTTTGTACATAAGGCAAGCA 5628 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||||||||| || |||||||| | || || ||||| ||||| || | |||||| Sbjct 5629 AAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGC 5688 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 ||| |||| ||||| | ||| || || | ||| || || ||||| || || |||||| Sbjct 5689 ATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCC 5748 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 ||||||| |||||| ||||| | ||| || || | || |||| | |||||| Sbjct 5749 TCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATCCAT 5808 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT 17209 || |||| ||||| || | ||||| ||| | ||||| || || || | Sbjct 5809 TTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAGC 5868 Query 17210 TTCTCTTTTTC--CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 ||| ||| || | | || ||| ||||| || ||||| | || |||||||||| Sbjct 5869 ATCTGTTTCTCATCAGGAGATCG--GATATAAGTGTCGATTAAAAGTGAATACATTTCGG 5926 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 | || ||||| |||||||| ||||| || ||||| || || || ||||| | | || | Sbjct 5927 AATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCA 5986 Query 17328 CTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 |||| | ||||| ||| | | ||||| || || ||||| || ||||| || | Sbjct 5987 CTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGA 6046 Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGT 17425 | ||||| | || | | ||| | ||||| || ||| Sbjct 6047 AAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGT 6084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517153371597720