Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5580 154 2e-32 >seq5580 Length=7482 Score = 154 bits (170), Expect = 2e-32 Identities = 497/764 (65%), Gaps = 12/764 (2%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATC-AAAGGGATT 15990 || || ||||| || || || || ||||| || || ||||||||||| || |||||| || Sbjct 5353 TTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTT 5412 Query 15991 A-GTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049 | | || |||| ||| | | ||||| | | | ||||| || || | Sbjct 5413 TCGGAATTGTAAAT--CTTGGGACATTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACT 5470 Query 16050 CTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTG 16109 | || || || ||| || || || || || || | | |||||| | ||| | | Sbjct 5471 CAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATGGCTACCGGTAAAGCATCGG 5530 Query 16110 TTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAG 16169 | || |||| ||| ||||| || || || || ||||| | || | || | | Sbjct 5531 TCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATTTGCGTAACGCGAGCGACGC 5590 Query 16170 ACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGT 16229 ||| | | | | ||||| |||| || || || || |||||||| | || |||| Sbjct 5591 CGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAATCGCAATGCAAACCCTCGT 5650 Query 16230 CTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACC 16289 | | || || |||||||||||||| | || ||||| |||| ||||| | || Sbjct 5651 CACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCC 5710 Query 16290 AGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTA 16349 |||| || | ||||| || || || || || |||||||| || | |||||| ||||| | Sbjct 5711 AGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGACGGCTGCAAAGGCGATGA 5770 Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409 ||| || || | || || | | |||||||| |||| ||||| || | Sbjct 5771 CTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCT 5830 Query 16410 GTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTC--CTGAATATC 16467 |||| |||| | ||||| || || |||| ||| ||| || | | | ||| Sbjct 5831 TCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAGCATCTGTTTCTCATCAGGAGATC 5890 Query 16468 GATTATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCT 16525 | ||||| || || || | ||| || |||||||| || || ||||| || ||||| Sbjct 5891 G--GATATAAGTGTCGATTA--AAAGTGAATACATTTCGGAATGAATGTTTTCCATGGCA 5946 Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585 ||||| || || ||||| || || || || | | || ||||| | |||||| ||| Sbjct 5947 ATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTTCTTGGGCAAATCGCTCC 6006 Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATG 16645 ||| ||| ||||| || || || ||| || ||||| || ||||| | ||| | | | Sbjct 6007 ACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGAAAGCCAAAACGTGGCTGACG 6066 Query 16646 AAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 || | ||||| |||| | | | | | |||||| | ||||| Sbjct 6067 AAGTGCTTTTCATCAGGTTTTAACTTTTCCCAATCGCTCAAATC 6110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511026818204280