Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq4723 596 5e-166 >seq4723 Length=43540 Score = 596 bits (660), Expect = 5e-166 Identities = 676/910 (74%), Gaps = 15/910 (2%) Strand=Plus/Minus Query 31348 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 31407 |||| |||||| |||||| || || || |||||||| || ||||| ||||| || || Sbjct 2285 TCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTC 2226 Query 31408 GATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCAC 31467 |||||| |||||||| |||||||||||| |||||||| || || || || || | || Sbjct 2225 GATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAA 2166 Query 31468 GACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATT 31527 ||||| || | |||||| || ||||| || ||||| || ||||||||| ||||||| || Sbjct 2165 GACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTT 2106 Query 31528 TTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTC 31587 |||| || | ||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct 2105 CTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTC 2046 Query 31588 GAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAG 31647 || || || |||| ||| |||||||| || |||||||| || ||||| |||||||| || Sbjct 2045 AAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAG 1986 Query 31648 GCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGCG 31707 ||| | ||| |||||| | || || ||||||||||| || |||||| | |||||||| Sbjct 1985 GCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCG 1926 Query 31708 ATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTCTGGC 31767 ||| |||||| || || | || | ||||||| ||||| || || ||||||| || Sbjct 1925 GAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGC 1866 Query 31768 GTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACACC 31827 ||| | ||| | ||||| ||||| ||||| | || |||||||||||||| | || || Sbjct 1865 GTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCC 1806 Query 31828 GGTGCAAACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTT 31887 |||||| || || || ||||||||||||||||| |||||||||||||| | ||||||||| Sbjct 1805 GGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTT 1746 Query 31888 TCCGGAGCGGGGTTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCG 31947 |||||||| ||||| | || |||||| ||||| || || || || |||||||| || Sbjct 1745 CCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCG 1686 Query 31948 TAATTTGTGCCACGCATCATCCCCCTGTTCGACAGCTCTCACATCGATCCCGGTACGCTG 32007 | | |||||||| ||||| || || ||||| | | | || || || || || || Sbjct 1685 CAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGC 1626 Query 32008 CAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCTGCGGCTTTCTGTTTCAGGAAT 32067 ||||||||| || ||||||||| ||||||| ||||| || ||||| Sbjct 1625 CAGGATAATTTCAGGTGTCATG---------------CTGCGGCCTTCTGCTTAAGGAAC 1581 Query 32068 CCAAGAGCTTTTACTGCTTCGGCCTGTGTCAGTTCTGACGATGCACGAATGTCGCGGCGA 32127 || |||||||| || |||||| || |||| || || | ||||| ||| || Sbjct 1580 CCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACGG 1521 Query 32128 AATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGC 32187 || || | || |||||||| | | ||| ||||||| || |||| || || || ||| Sbjct 1520 AAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAGC 1461 Query 32188 AGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGA 32247 | | || | || | || ||||| || |||| | | ||||||||| |||||| Sbjct 1460 AAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTGA 1401 Query 32248 CGTTCTGCAG 32257 || || |||| Sbjct 1400 CGCTCGGCAG 1391 Score = 118 bits (130), Expect = 3e-22 Identities = 110/135 (81%), Gaps = 5/135 (4%) Strand=Plus/Minus Query 44582 GACTC-AACGATGGGTTAATTCGCTCGTTGTGGTAGTGAGATGAAAAGAGGCGGCGCTTA 44640 ||||| |||||||||||| | |||||| | ||||||| || ||||||||||| | Sbjct 33491 GACTCTAACGATGGGTTACTGACTTCGTTGGCG--GTGAGAT-AAGCGAGGCGGCGCTCA 33435 Query 44641 CTACCGATTCCGCCTAGTTGGTCACTTCGACGTATCGTCTGGAACTCCAACCATCGCAGG 44700 | || || ||||||||||||| |||||||| ||||||||| ||||||||| ||||||| Sbjct 33434 CCACTGAA-CCGCCTAGTTGGTATCTTCGACGCATCGTCTGGTACTCCAACCGTCGCAGG 33376 Query 44701 CAGAGAGGTCTGCAA 44715 | ||||||| ||||| Sbjct 33375 CTGAGAGGTTTGCAA 33361 Score = 114 bits (126), Expect = 4e-21 Identities = 130/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 38516 ATGCTGCTTGCTGTTCTTGAATGGGGGGTCGTTGACGACGACATGGCTCGATTGGCGCGA 38575 |||||||| || | | || ||||| || |||||||| ||||||||| | | ||||| Sbjct 39246 ATGCTGCTGGCAGAGTTGGAGTGGGGCGTAGTTGACGATGACATGGCTAGGCTAGCGCGG 39187 Query 38576 CAAGTTGCTGCGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA 38635 ||||||| | | ||||| || ||||| |||||||||||||||||||| || || ||| Sbjct 39186 GAAGTTGCCGGTCTGCTCACAAAGAAAAATCGCCCGGCGGCAACCGAGCGATCAGATCAA 39127 Query 38636 ATCCAGATGGAGTTCTGAG-GTCATTACTGGATCTATCAACAGGAGTCATTAT 38687 ||| || ||||||| || |||||||| || |||||||| ||||| Sbjct 39126 ATCACCATAACATTCTGAGACGAATAACTGGATCAATTCACAGGAGTAATTAT 39074 Score = 82.4 bits (90), Expect = 2e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 30562 TGTTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 30621 |||| ||||| | ||||| || |||| ||| | ||| |||||||| ||||| | || | Sbjct 5134 TGTTACGCTGAAGCTCTTCAATCTCTGCTGCGGTATCGATGATGTCAGCCATGGT-CAAT 5076 Query 30622 AATCCCTGAACTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGG 30676 |||| ||||||| |||||| || |||| |||||| || | ||||||||||| Sbjct 5075 GCTCCCGGAACTGTCGGTTAAGTCGGTTGAAGGTGAAGGCCAGCAATAAAAAAGG 5021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154973143693472