Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5375 107 2e-18 >seq5375 Length=21980 Score = 107 bits (118), Expect = 2e-18 Identities = 237/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| |||||| | ||| || || |||| || || ||||| || ||||| ||| Sbjct 1124 AGGCCAGTGACGTGGGCCATCATATATGTTAGCAAGGCATAACTGGCGATATTGAAAGGC 1183 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 ||||| | ||||| || | || ||||| |||| ||||| || ||||| ||| ||| Sbjct 1184 ACCCCTAAGCCCATATCAGCTGAACGCTGATACATTTGGCATGAAAGCTCGCCGTTGGCC 1243 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 || || ||||| ||| |||||| || || || ||||| ||| | | | ||| Sbjct 1244 ACATAAAACTGCGCTAGGCAGTGGCAAGGAGGAAGTGCCATTTGGGGTAAGGCGCAAGGG 1303 Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTC-TCGGGGTTCCTCTTGA---TCTCCCCTAT 145985 ||||||||| | | || | | | | || || ||||| | |||| | | || Sbjct 1304 TTCCAGGCGCTTAAAACCATGCGGC-GATCATCTGGGTTGGTTTTGATGGTGTGGAGAAT 1362 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACG 146044 | ||| || || ||||| || || | ||||||| | || | || ||| Sbjct 1363 GTGTTCC---AGTTGATCCACACCTTGTTGGCTATAATCTG-CATGCATGTTGGAGTATT 1418 Query 146045 CGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCC 146093 |||| ||||| || | ||||||||| ||||||||||| |||| ||| || Sbjct 1419 CGGCGCCGAAATGACGCCACTGGAAGCCGTAGACGGGACCCAAGTCGCC 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589629602921160