Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6222 98.7 8e-16 >seq6222 Length=12937 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| ||||| ||||||||| ||| || || | Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| ||||| || |||||||| | || |||||| Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || || || ||||||||||||||||| | || || | || ||||| Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| ||||| || |||||| |||| | || || ||||| || Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGG 4878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| ||||||||||||||||| ||| ||| ||||| | Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | |||| |||||| || || |||||| | || ||||| Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | ||||| || || || |||||||||||| || || |||| || ||| Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || |||||||| ||||| || |||| || || Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCG 3750 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || | || ||||||||||| || ||| || ||| | Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | |||| ||||| || |||||||| | ||| |||||| Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||| || | ||||| || |||||||| |||||||| || | ||| | ||||||| Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTAT--CTGATTACA 4243 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| ||||| ||||| || |||||| |||| |||| || ||||| || Sbjct 4242 ATATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGG 4194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410493255697406