Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5580 266 3e-66 seq6222 122 9e-23 seq3468 91.5 2e-13 >seq5580 Length=7482 Score = 266 bits (294), Expect = 3e-66 Identities = 476/695 (68%), Gaps = 0/695 (0%) Strand=Plus/Minus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || ||| ||| ||||| |||| || || |||||| || ||||| ||||| || || Sbjct 6071 CACTTCGTCAGCCACGTTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAATGAAAAC 6012 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 |||| ||||| || || || || |||||||| |||| ||||| || ||||||||||| Sbjct 6011 TTGGTGGAGCGATTTGCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTTC 5952 Query 116861 CAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTG 116920 ||||| |||||||| ||| | || || ||||||||||| | |||||||| || | Sbjct 5951 CAGATTGCCATGGAAAACATTCATTCCGAAATGTATTCACTTTTAATCGACACTTATATC 5892 Query 116921 CGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAA 116980 || ||| | || ||||| | |||| || ||||| || | || || || || Sbjct 5891 CGATCTCCTGATGAGAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAAG 5832 Query 116981 GAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| | |||||| | | || || | || | ||||| Sbjct 5831 AAGAAGGCCGATTGGGCCTTTAAATGGATCTCTGACAACACAGCAGGTTTTGCTGAGCGA 5772 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 | | ||||| || ||||||||||| | || || || ||| ||| ||| |||| || Sbjct 5771 GTCATCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTC 5712 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||| ||||| | || | |||||||| || ||||| |||||||||||| || | Sbjct 5711 TGGCTGAAGAAGAGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGT 5652 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 ||||||||| |||||||||| ||||| || | ||| ||| |||||||| | ||| Sbjct 5651 GACGAGGGTTTGCATTGCGATTTTGCTTGCCTTATGTACAAACATTTGGTCAACAAACCC 5592 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| || ||||| | | | ||| || ||| || || | || ||||| ||| | Sbjct 5591 GGCGTCGCTCGCGTTACGCAAATCATCCGCGATGCTGTGGTTATAGAGCAAGAATTCTTG 5532 Query 117281 ACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 ||||| || | ||||| |||| || | || || || |||| || ||||| Sbjct 5531 ACCGATGCTTTACCGGTAGCCATGCTTGGCATGAACTGTGATTTGATGAAACAGTACATT 5472 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||| ||| |||| || |||| || | ||||| ||||| | Sbjct 5471 GAGTTCGTCGCAGACCGGCTCTTGGTCGAACTTCAATGTCCCAAGATTTACAATTCCGAA 5412 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTCCTTGGA 117435 ||||| | ||||||||| | ||| ||||| || Sbjct 5411 AACCCTTTCGACTTTATGGAAAACATTTCCTTAGA 5377 >seq6222 Length=12937 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | |||||||||||||||||| | || || ||| | || Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||| | ||||||| ||||| || || || || | || || Sbjct 3904 GACACCATTGAAAACG-TCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCA 3846 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || || |||| || | || ||| | |||||| || Sbjct 3845 GCAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAA 3786 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | || || ||| | || ||||| | | |||||| Sbjct 3785 TATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTCCGTGGCGGC 3737 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||||||||||||| | || ||||| || | Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| |||| | ||||| | |||||||| ||||| ||| | || || Sbjct 4360 GACACCATTGAAAACG-TCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCA 4302 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| ||||||||| |||| |||| || ||| | || ||||| Sbjct 4301 ACAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAA 4242 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || |||| || || | || | || ||| | ||||| Sbjct 4241 TATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGG 4194 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||||||||| | || || || | | Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| |||| | || || | |||||||| ||||| ||| | ||||| Sbjct 4588 GACACCATTGAAAACG-TCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCA 4530 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| ||||| || ||||| |||| || ||| | || ||||| Sbjct 4529 ACAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAA 4470 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || |||| || || | || |||| ||| | ||||| Sbjct 4469 TATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGG 4422 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||||||| ||||| || || || |||||||| || || ||| |||| || || | Sbjct 5334 AAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTT 5275 Query 40748 CCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | ||||| |||| | ||||||| |||||||| || |||||| | ||| Sbjct 5274 CGGATACCATTGAAAACG-TCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGAC 5216 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| | || | ||| ||||| || |||| || | || || | || ||| Sbjct 5215 CAGCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTAC 5156 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| || |||| |||||| | || ||||| Sbjct 5155 AACATTCAGAAAGAATCCACCCTGCATTTGGTATTGCG 5118 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| |||||||| || || ||||| | || |||||| | || Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| | ||||||| || ||||| ||||| || | || || Sbjct 4816 GACACTATTGAGAACG-TCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCA 4758 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | ||| |||||||| |||| |||| || ||||| |||||||| Sbjct 4757 ACAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAA 4698 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| || ||||| | || || ||| Sbjct 4697 CATTCAAAAGGAATCTACACTCCAT 4673 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || ||||| ||||| ||| | || || || | || Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||| | |||||||| ||||| || | || || Sbjct 5044 GACACCATTGAAAACG-TCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCA 4986 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | ||| |||||||| |||| |||| || ||| | |||||||| Sbjct 4985 ACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAA 4926 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || || |||| || || | || | || ||| | ||||| Sbjct 4925 CATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGG 4878 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| ||||| ||||| || ||||| | || |||||| | | Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | ||||| || ||||| || | || || Sbjct 4132 GACACCATTGAGAACG-TCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCA 4074 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | || ||||| ||| | || || | ||||| | ||||||||| Sbjct 4073 ACAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAA 4014 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || | || || |||||||| |||| Sbjct 4013 CATCCAGAAAGAATCTACTCTTCATCTAGTCCTGCG 3978 >seq3468 Length=50068 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || ||||| | | Sbjct 38278 ATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTCA 38337 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | ||||| || || |||||| | || || Sbjct 38338 GACACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGATCAA 38397 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| |||||||| |||| |||| | || || ||||||||| Sbjct 38398 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGACGGCAGGACTCTTTCTGACTACAAC 38457 Query 40870 ATCCAGAA 40877 |||||||| Sbjct 38458 ATCCAGAA 38465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514828734689040