Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6222 129 9e-25 >seq6222 Length=12937 Score = 129 bits (142), Expect = 9e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || ||||| ||||| || | || | || | Sbjct 5333 AATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTC 5274 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | ||| ||||||||||| ||||||||||| || ||||| || Sbjct 5273 GGATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCA 5214 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| || || || ||||| || ||| |||| || || |||||| || Sbjct 5213 GCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACAA 5154 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| |||||||| || |||||||||| || ||| | || ||||| || ||| || Sbjct 5153 CATTCAGAAAGAATCCACCCTGCATTTGGTATTGCGTCTCCGTGGTGGCATGCAAATTT 5095 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || |||||||| || ||| | || | || | | Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||| ||||| |||||||| || || || |||||| Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || ||||| || || || |||| || ||| ||||| ||| Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAAT 4241 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || |||||| ||||||| ||||| ||||| Sbjct 4240 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGGTAT 4191 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || |||||||| || ||| | || |||| | | Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| || || ||||| |||||||| || || ||||| ||| Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || || ||| | || || |||| || || ||||| ||| Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || |||||| | ||||| ||||| ||||| Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGGTAT 4419 Score = 104 bits (114), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || |||||||| || || | || ||||| | Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||||||||| || |||||||| || || ||||| Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || || ||||| || ||| |||| || || || |||||| Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || ||||||||| | |||||||| || ||| | || || || Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTCCGTGGCGG 3738 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || || || || ||| | || | ||| | Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| |||||||||||||||||||| || || ||||||||| Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 4757 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || |||||||| || || |||| || | || || || Sbjct 4756 CAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAAC 4697 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | |||||||| | ||| | || || ||||| Sbjct 4696 ATTCAAAAGGAATCTACACTCCATTTGGTCCTCCGTCTCCGTGGCGGTAT 4647 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| |||||||| || || || ||||||||| | | ||||| || || ||| Sbjct 5020 AAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTTTGATTTTCGCTGGCAAA 4961 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || || | || || || || || || || ||||||||||| || | || Sbjct 4960 CAATTGGAAGACGGCCGTACCTTGTCTGACTACAACATCCAAAAAGAATCCACCCTTCAC 4901 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| | ||||| ||||| ||||| ||| || Sbjct 4900 TTGGTTCTCCGTTTGCGAGGCGGTATGCAAATTT 4867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754883468227200