Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5580 122 8e-23 seq6222 116 3e-21 >seq5580 Length=7482 Score = 122 bits (134), Expect = 8e-23 Identities = 245/361 (68%), Gaps = 7/361 (2%) Strand=Plus/Minus Query 44940 TGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCA 44999 |||||||||| || || ||| |||||| | |||||| | ||||| ||| |||| | Sbjct 5692 TGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAGGGTTTGCATTGCG 5633 Query 45000 ACTTTGCCTGCCTCTACTATAATACGAGAGTCGATCAA--AAGTTGGACGCGCCCACCGT 45057 | ||||| ||||| || || | | | | |||| || || ||| | | || Sbjct 5632 ATTTTGCTTGCCTTATGTACAA----ACATTTGGTCAACAAACCCGGCGTCGCTCGC-GT 5578 Query 45058 CAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCC 45117 | | || || ||| || |||| || ||| ||||| || | || ||| | || Sbjct 5577 TACGCAAATCATCCGCGATGCTGTGGTTATAGAGCAAGAATTCTTGACCGATGCTTTACC 5518 Query 45118 CGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGA 45177 | | | || | || |||||| || |||||| | ||||||||||||| ||||| || Sbjct 5517 GGTAGCCATGCTTGGCATGAACTGTGATTTGATGAAACAGTACATTGAGTTCGTCGCAGA 5458 Query 45178 TCGTCTTCTCGTCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTT 45237 || || | ||| | | | | ||||||||| ||| || | || ||||| ||||| || Sbjct 5457 CCGGCTCTTGGTCGAACTTCAATGTCCCAAGATTTACAATTCCGAAAACCCTTTCGACTT 5398 Query 45238 TATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATA 45297 |||| | || ||||| || || ||||| || ||||| |||||||| || |||||||| Sbjct 5397 TATGGAAAACATTTCCTTAGAAGGCAAGACGAATTTCTTTGAGAAGAAAGTGGGCGAATA 5338 Query 45298 C 45298 | Sbjct 5337 C 5337 >seq6222 Length=12937 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| || |||||||| ||| || |||||| ||| || | ||| || || Sbjct 3996 GTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTCTAACTGCTTGCCG 4055 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| || ||||||||||| ||||| ||||||||| ||||| || Sbjct 4056 GCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCCTTG 4115 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | |||||| | || | ||||| || | || | ||| ||||| || || || Sbjct 4116 ACGTTCTCAATGGTGTCTGATGGT-TCGACTTCCAAAGTGATCGTCTTGCCAGTGAGGGT 4174 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||||||||||||||| Sbjct 4175 TTTTACAAAAATCTGCAT 4192 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || |||||||| || |||||||| | || || || || Sbjct 4212 ACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCC 4271 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| |||||| |||| | || || |||||||| || ||||| || |||||| Sbjct 4272 AACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGG 4331 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||| | |||||| | | |||||| || | || | |||||| Sbjct 4332 ATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTG 4391 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||||||||| Sbjct 4392 CCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || |||||||| |||||||| || || || || || || Sbjct 4896 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCTTCC 4955 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| |||||| | || | ||| || ||||||||||| ||||| || |||||| Sbjct 4956 AATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGG 5015 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||| | |||||| | ||| || || | ||| | || ||| Sbjct 5016 ATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCTTG 5075 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||||| || ||||| |||||| Sbjct 5076 CCAGTCAAGGTTTTGACGAAAATTTGCATG 5105 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || || | || |||||||| | || || |||||||| || |||||||| Sbjct 4420 TACCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAG 4479 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || || || || || || || ||| |||||||||| || || || || | Sbjct 4480 ACAAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGG 4539 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| || |||||| || || ||| || | ||| | |||||| | ||| | Sbjct 4540 GAATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAA 4599 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||||||||||| ||| || || || || ||||| Sbjct 4600 CTTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| ||||| |||| || || || || || || || || ||| || || || ||| Sbjct 3752 CAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATC 3811 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || || || ||| |||| | ||| |||||||||||||| || || |||||||| Sbjct 3812 TTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTC 3871 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | ||| | |||||| | || || || | ||| | || Sbjct 3872 TTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGT 3931 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| |||| ||||| || || || ||||| Sbjct 3932 TTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| ||||| || | || || ||||| |||||||||||||| || || || ||| Sbjct 5120 CAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACCATC 5179 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || || |||||| | || | ||| ||||| || || || || || || ||||| Sbjct 5180 TTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTTGTC 5239 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | ||| | ||| |||| ||| || |||| ||| | || Sbjct 5240 TTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAATAGT 5299 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || || ||||| Sbjct 5300 CTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| |||||| || |||||||||||||| || || || || || || Sbjct 4668 ACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCC 4727 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || ||| | || | ||| || ||||| ||||| ||||| || || ||| | Sbjct 4728 AATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGA 4787 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | || | ||||| | ||||| || | || | ||| || Sbjct 4788 ATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTT 4847 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| || ||||| ||||| Sbjct 4848 CCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433509835803268