Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15288 107 2e-18 seq6222 104 3e-17 seq15287 102 9e-17 seq11156 102 9e-17 seq24169 100 3e-16 seq7128 100 3e-16 seq119 100 3e-16 seq39572 98.7 1e-15 seq826 98.7 1e-15 seq39891 95.1 1e-14 seq9514 95.1 1e-14 seq4683 95.1 1e-14 seq3181 95.1 1e-14 seq91 91.5 2e-13 >seq15288 Length=1633 Score = 107 bits (118), Expect = 2e-18 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| || ||||||||||||||| ||||||||||||||||||||| |||| Sbjct 843 AAAAATT--CTCCCCGACAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 900 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 901 TCACCACTATACTATCGAGGA 921 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| |||||| || | | ||||||||||| ||||||||||||||||||||| ||||| Sbjct 387 AAAATATTCTCCCCGACGGTGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 446 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||| ||| || Sbjct 447 CACCACTATACTATCGAAGA 466 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1564 GAAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1623 Query 60116 CTCACCACTA 60125 |||||||||| Sbjct 1624 CTCACCACTA 1633 >seq6222 Length=12937 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| ||||||| ||||| || | ||| || ||||| ||||||||||||| | Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || || ||||| || ||||| ||||| || || ||||| | || Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || ||||| ||| || ||||| | | | ||||| || || || Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || | ||||| || ||||||||||| Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||| | || ||||| || ||||| || || | || || || | Sbjct 3749 ACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACC 3808 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||||| ||||| || | || ||||| |||| || | | ||||| Sbjct 3809 ATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTT 3868 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| |||| | ||||| | | | |||||| || ||| || || | |||| Sbjct 3869 GTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGA 3927 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||||||| | || || || ||||||||||| Sbjct 3928 TGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| ||||| | ||||| || | ||| || ||||| ||||||||||||| Sbjct 4194 CCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAT 4253 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || | ||| || |||||||| || | ||| || || |||| || Sbjct 4254 AAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGA 4313 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || ||||| |||||| ||||| | | | ||||| | || || Sbjct 4314 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACT 4373 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || ||||| || || || ||||| Sbjct 4374 TCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||||| ||| || || ||||| |||||||| | || || || | Sbjct 5117 ACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACC 5176 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||||| |||||||| || | || |||||||| | || | | || || Sbjct 5177 ATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTT 5236 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| |||| | ||||| | | | || || | || || |||| || | Sbjct 5237 GTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAA 5295 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 | || |||||||| || ||||| || ||||||||||||| Sbjct 5296 TAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTT 5334 >seq15287 Length=6565 Score = 102 bits (112), Expect = 9e-17 Identities = 81/96 (84%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 60042 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGT 60101 |||| || |||| |||||| |||| || | ||||||||||||| |||||||||||| Sbjct 2100 AAATAAAATTTTA--AAAAAT---CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGT 2154 Query 60102 GACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||| |||||||||||||||||| |||||| Sbjct 2155 GACAGGCGGGGATACTCACCACTATACTATCGAGGA 2190 >seq11156 Length=7987 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| ||||||| || | ||||||||||||| ||||||||||||||||||||| || Sbjct 7911 TGTAAAAATTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7970 Query 60115 ACTCACCACTATACTA 60130 |||||||||||||||| Sbjct 7971 ACTCACCACTATACTA 7986 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 7245 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 7304 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 7305 ATACTATCGAGGA 7317 >seq24169 Length=604 Score = 100 bits (110), Expect = 3e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 7 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 66 Query 60136 GATTG 60140 ||||| Sbjct 67 GATTG 71 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||||| ||||| | | ||||||||||||| ||||||||||||||||||||| | Sbjct 301 ATAAAAAATTCTCTCC--GACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 244 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| ||| || Sbjct 243 TACTGACCACTATACTATCGAAGA 220 >seq7128 Length=6786 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1274 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1215 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1214 ATACTATCGAGGA 1202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 6784 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 6725 Query 60136 GA 60137 || Sbjct 6724 GA 6723 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 62 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3 Query 60125 AT 60126 || Sbjct 2 AT 1 >seq119 Length=83455 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 12616 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 12675 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 12676 ATACTATCGAGGA 12688 >seq39572 Length=738 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 524 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 583 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 584 TACTATCGAGGA 595 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 665 AAAAAATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 724 Query 60118 CACCACTATACTA 60130 ||||||||||||| Sbjct 725 CACCACTATACTA 737 >seq826 Length=9839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| | ||||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 9762 ATAAAAAAATATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 9821 Query 60114 TACTCACCACTATACTA 60130 ||||||||||||||||| Sbjct 9822 TACTCACCACTATACTA 9838 >seq39891 Length=205 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 6 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 65 Query 60136 GA 60137 || Sbjct 66 GA 67 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| ||||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 134 ATGGAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 193 Query 60114 TACTCACCACTA 60125 |||||||||||| Sbjct 194 TACTCACCACTA 205 >seq9514 Length=1590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 1588 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 1529 Query 60136 GA 60137 || Sbjct 1528 GA 1527 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 60049 CGTTTATGAAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGG 60107 |||| || ||||| | | ||| || | ||||||||||| | |||||||||||||||||| Sbjct 1414 CGTTAATAAAAAACATACCTCCCCGACGGGGAATCGAACACCGGTCTCCCGCGTGACAGG 1355 Query 60108 CGGACATACTCACCACTATACTACCGAGGA 60137 ||| ||||| |||||||||||| |||||| Sbjct 1354 CGGGGATACTGACCACTATACTATCGAGGA 1325 >seq4683 Length=10136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 2 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 61 Query 60136 GA 60137 || Sbjct 62 GA 63 >seq3181 Length=13172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 2 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 61 Query 60136 GA 60137 || Sbjct 62 GA 63 >seq91 Length=30772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30705 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30764 Query 60126 TACTACCG 60133 ||||| || Sbjct 30765 TACTATCG 30772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571384240884120