Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq15288 107 2e-18
seq6222 104 3e-17
seq15287 102 9e-17
seq11156 102 9e-17
seq24169 100 3e-16
seq7128 100 3e-16
seq119 100 3e-16
seq39572 98.7 1e-15
seq826 98.7 1e-15
seq39891 95.1 1e-14
seq9514 95.1 1e-14
seq4683 95.1 1e-14
seq3181 95.1 1e-14
seq91 91.5 2e-13
>seq15288
Length=1633
Score = 107 bits (118), Expect = 2e-18
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| |||| || ||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 843 AAAAATT--CTCCCCGACAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 900
Query 60117 TCACCACTATACTACCGAGGA 60137
|||||||||||||| ||||||
Sbjct 901 TCACCACTATACTATCGAGGA 921
Score = 100 bits (110), Expect = 3e-16
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117
||||| |||||| || | | ||||||||||| ||||||||||||||||||||| |||||
Sbjct 387 AAAATATTCTCCCCGACGGTGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 446
Query 60118 CACCACTATACTACCGAGGA 60137
||||||||||||| ||| ||
Sbjct 447 CACCACTATACTATCGAAGA 466
Score = 86.0 bits (94), Expect = 7e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||
Sbjct 1564 GAAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1623
Query 60116 CTCACCACTA 60125
||||||||||
Sbjct 1624 CTCACCACTA 1633
>seq6222
Length=12937
Score = 104 bits (114), Expect = 3e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||| ||||||| ||||| || | ||| || ||||| ||||||||||||| |
Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || || |||| || || ||||| || ||||| ||||| || || ||||| | ||
Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || || ||||| ||| || ||||| | | | ||||| || || ||
Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||||||||| || | ||||| || |||||||||||
Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
|||||| |||||||| | || ||||| || ||||| || || | || || || |
Sbjct 3749 ACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACC 3808
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || | |||||||| ||||| || | || ||||| |||| || | | |||||
Sbjct 3809 ATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTT 3868
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
||| ||| |||| | ||||| | | | |||||| || ||| || || | ||||
Sbjct 3869 GTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGA 3927
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||||||||||| | || || || |||||||||||
Sbjct 3928 TGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964
Score = 86.0 bits (94), Expect = 7e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||| ||||| | ||||| || | ||| || ||||| |||||||||||||
Sbjct 4194 CCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAT 4253
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || || |||| || | ||| || |||||||| || | ||| || || |||| ||
Sbjct 4254 AAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGA 4313
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || || ||||| |||||| ||||| | | | ||||| | || ||
Sbjct 4314 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACT 4373
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||||||||| || || ||||| || || || |||||
Sbjct 4374 TCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420
Score = 86.0 bits (94), Expect = 7e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
|||||| |||||||||| ||| || || ||||| |||||||| | || || || |
Sbjct 5117 ACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACC 5176
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || | ||||| |||||||| || | || |||||||| | || | | || ||
Sbjct 5177 ATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTT 5236
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
||| ||| |||| | ||||| | | | || || | || || |||| || |
Sbjct 5237 GTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAA 5295
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185
| || |||||||| || ||||| || |||||||||||||
Sbjct 5296 TAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTT 5334
>seq15287
Length=6565
Score = 102 bits (112), Expect = 9e-17
Identities = 81/96 (84%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 60042 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGT 60101
|||| || |||| |||||| |||| || | ||||||||||||| ||||||||||||
Sbjct 2100 AAATAAAATTTTA--AAAAAT---CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGT 2154
Query 60102 GACAGGCGGACATACTCACCACTATACTACCGAGGA 60137
||||||||| |||||||||||||||||| ||||||
Sbjct 2155 GACAGGCGGGGATACTCACCACTATACTATCGAGGA 2190
>seq11156
Length=7987
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
|| |||| ||||||| || | ||||||||||||| ||||||||||||||||||||| ||
Sbjct 7911 TGTAAAAATTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7970
Query 60115 ACTCACCACTATACTA 60130
||||||||||||||||
Sbjct 7971 ACTCACCACTATACTA 7986
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 7245 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 7304
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 7305 ATACTATCGAGGA 7317
>seq24169
Length=604
Score = 100 bits (110), Expect = 3e-16
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 7 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 66
Query 60136 GATTG 60140
|||||
Sbjct 67 GATTG 71
Score = 95.1 bits (104), Expect = 1e-14
Identities = 72/84 (86%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
|| ||||||| ||||| | | ||||||||||||| ||||||||||||||||||||| |
Sbjct 301 ATAAAAAATTCTCTCC--GACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 244
Query 60114 TACTCACCACTATACTACCGAGGA 60137
|||| |||||||||||| ||| ||
Sbjct 243 TACTGACCACTATACTATCGAAGA 220
>seq7128
Length=6786
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1274 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1215
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 1214 ATACTATCGAGGA 1202
Score = 95.1 bits (104), Expect = 1e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 6784 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 6725
Query 60136 GA 60137
||
Sbjct 6724 GA 6723
Score = 86.0 bits (94), Expect = 7e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 62 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3
Query 60125 AT 60126
||
Sbjct 2 AT 1
>seq119
Length=83455
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 12616 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 12675
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 12676 ATACTATCGAGGA 12688
>seq39572
Length=738
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 524 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 583
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 584 TACTATCGAGGA 595
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117
|||| |||||| || | ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 665 AAAAAATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 724
Query 60118 CACCACTATACTA 60130
|||||||||||||
Sbjct 725 CACCACTATACTA 737
>seq826
Length=9839
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
|| ||||| | ||||| || | ||||||||||||| ||||||||||||||||||||| |
Sbjct 9762 ATAAAAAAATATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 9821
Query 60114 TACTCACCACTATACTA 60130
|||||||||||||||||
Sbjct 9822 TACTCACCACTATACTA 9838
>seq39891
Length=205
Score = 95.1 bits (104), Expect = 1e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 6 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 65
Query 60136 GA 60137
||
Sbjct 66 GA 67
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
||| |||| ||||| || | ||||||||||||| ||||||||||||||||||||| |
Sbjct 134 ATGGAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 193
Query 60114 TACTCACCACTA 60125
||||||||||||
Sbjct 194 TACTCACCACTA 205
>seq9514
Length=1590
Score = 95.1 bits (104), Expect = 1e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1588 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 1529
Query 60136 GA 60137
||
Sbjct 1528 GA 1527
Score = 91.5 bits (100), Expect = 2e-13
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 60049 CGTTTATGAAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGG 60107
|||| || ||||| | | ||| || | ||||||||||| | ||||||||||||||||||
Sbjct 1414 CGTTAATAAAAAACATACCTCCCCGACGGGGAATCGAACACCGGTCTCCCGCGTGACAGG 1355
Query 60108 CGGACATACTCACCACTATACTACCGAGGA 60137
||| ||||| |||||||||||| ||||||
Sbjct 1354 CGGGGATACTGACCACTATACTATCGAGGA 1325
>seq4683
Length=10136
Score = 95.1 bits (104), Expect = 1e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 2 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 61
Query 60136 GA 60137
||
Sbjct 62 GA 63
>seq3181
Length=13172
Score = 95.1 bits (104), Expect = 1e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 2 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 61
Query 60136 GA 60137
||
Sbjct 62 GA 63
>seq91
Length=30772
Score = 91.5 bits (100), Expect = 2e-13
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 30705 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30764
Query 60126 TACTACCG 60133
||||| ||
Sbjct 30765 TACTATCG 30772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571384240884120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |