Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5580 183 3e-41 >seq5580 Length=7482 Score = 183 bits (202), Expect = 3e-41 Identities = 484/729 (66%), Gaps = 20/729 (3%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||||| | ||| |||| ||||||||||| || || |||||||| ||||| ||| Sbjct 5332 TTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTT 5391 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG---CATCCCAATTCCAAC 16060 |||||||| || ||||| |||| | ||| ||| | | | ||| | ||| | | Sbjct 5392 TCCATAAAGTCGAAAGGGTTTTCGG---AATTGTAAATCTTGGGACATTGAAGTTCGACC 5448 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || | | || || || || || || ||||||||||| |||||||||||||| || | Sbjct 5449 AAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGC 5508 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | || || | || || || || || | || |||||| || || || ||| Sbjct 5509 ATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATG 5568 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACA 16236 || | | || || | | ||| |||||| | || ||||| |||| | || Sbjct 5569 AT-TTGCGTA--ACGCGA-GCGACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCA 5624 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||||||| |||||||| || ||||| | || | |||||| ||||| |||||||| Sbjct 5625 AGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACC 5684 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| | |||| || || | ||| || || | |||||| || ||||| || || || Sbjct 5685 GGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAAT 5744 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCA-CCGTACGTTCTAtttttactttcta 16415 ||| || || || ||||| || | | ||||||| | || | || | || | | Sbjct 5745 ACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTC-AGAGA 5803 Query 16416 tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 ||||||| ||||||| || || | || ||||| | | | || || || | Sbjct 5804 TCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGA 5863 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT--ATACAT 16533 | | | ||| || | | | |||||||| || |||| ||| | |||||| Sbjct 5864 ACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTA--AAAGTGAATACAT 5921 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| |||||||| || ||||| || ||||| || || || || || | ||||||| | Sbjct 5922 TTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAAC 5981 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 || ||||| | ||| | || | |||||||| || || || ||||| || || Sbjct 5982 CTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGC 6041 Query 16654 AAAAAACGC 16662 ||| || || Sbjct 6042 AAAGAAAGC 6050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462161479499400